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Error with brew install brewsci/bio/epa-ng on ARM64 M1 with Sequoia #1961

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borexino opened this issue Dec 15, 2024 · 2 comments
Open
5 tasks done

Error with brew install brewsci/bio/epa-ng on ARM64 M1 with Sequoia #1961

borexino opened this issue Dec 15, 2024 · 2 comments

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@borexino
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borexino commented Dec 15, 2024 •
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  • Confirmed this is a problem with brew installing one, specific formula and not every time you run brew? If it's a general brew problem please file this issue at https://github.com/Homebrew/brew/issues/new.
  • Ran brew update and retried your prior step?
  • Ran brew doctor, fixed all issues and retried your prior step?
  • Ran brew gist-logs <formula> (where <formula> is the name of the formula that failed) and included the output link?
  • If brew gist-logs didn't work: ran brew config and brew doctor and included their output with your issue?

Tried to run brew install brewsci/bio/epa-ng on osx ARM64 M1 with Sequoia
here the output:

(base) user@MacBook-Pro-14-di-Davide ~ % brew install brewsci/bio/epa-ng

==> Fetching brewsci/bio/epa-ng
==> Downloading https://github.com/Pbdas/epa-ng/archive/refs/tags/v0.3.8.tar.gz
Already downloaded: /Users/user/Library/Caches/Homebrew/downloads/7399d16cf3e28124109eaf40db806751fabe3c0debdf2951bb05ec1da150b858--epa-ng-0.3.8.tar.gz
==> Installing epa-ng from brewsci/bio
==> cmake ..
==> make
Last 15 lines from /Users/user/Library/Logs/Homebrew/epa-ng/02.make:
  [ 37%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o -MF CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o.d -o CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/tbe_functions.c
[ 38%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o -MF CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o.d -o CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/utree_distances.c
[ 39%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o -MF CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o.d -o CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/utree_operations.c
[ 39%] Built target pllmodalgorithm_obj
[ 39%] Built target pllmodutil_obj
[ 40%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/split_utree.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/split_utree.c.o -MF CMakeFiles/pllmodtree_obj.dir/split_utree.c.o.d -o CMakeFiles/pllmodtree_obj.dir/split_utree.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/split_utree.c
[ 41%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/lex_split.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/lex_split.c.o -MF CMakeFiles/pllmodtree_obj.dir/lex_split.c.o.d -o CMakeFiles/pllmodtree_obj.dir/lex_split.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/lex_split.c
[ 41%] Built target pllmodoptimize_obj
[ 41%] Built target pllmodtree_obj
make: *** [all] Error 2

If reporting this issue please do so at (not Homebrew/brew or Homebrew/homebrew-core):
  https://github.com/brewsci/homebrew-bio/issues

(base) user@MacBook-Pro-14-di-Davide ~ %

I did: cat /Users/user/Library/Logs/Homebrew/epa-ng/02.make with the following output:

(base) user@MacBook-Pro-14-di-Davide ~ % cat /Users/user/Library/Logs/Homebrew/epa-ng/02.make

2024-12-15 13:16:35 +0000

make

/opt/homebrew/opt/cmake/bin/cmake -S/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 -B/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build --check-build-system CMakeFiles/Makefile.cmake 0
/opt/homebrew/opt/cmake/bin/cmake -E cmake_progress_start /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/CMakeFiles /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build//CMakeFiles/progress.marks
/Library/Developer/CommandLineTools/usr/bin/make  -f CMakeFiles/Makefile2 all
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/build.make libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/build.make libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/build.make libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/build.make libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/build.make libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/build.make libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/build.make libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/depend
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/build.make libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/depend
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/binary /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/binary /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/msa /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/msa /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/genesis/lib/genesis /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/genesis/lib/genesis /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/DependInfo.cmake "--color="
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/build.make libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/build
[  1%] [BISON][parse_utree_t] Building parser with bison 2.3
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src && /usr/bin/bison -y -d -p pll_utree_ -d -o /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src/parse_utree.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/parse_utree.y
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/build.make libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/build
[  2%] [FLEX][lex_utree_t] Building scanner with flex 2.6.4
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src && /usr/bin/flex -P pll_utree_ -o/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src/lex_utree.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/lex_utree.l
[  3%] [FLEX][lex_rtree_t] Building scanner with flex 2.6.4
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src && /usr/bin/flex -P pll_rtree_ -o/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src/lex_rtree.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/lex_rtree.l
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/build.make libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/build
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/build.make libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/build
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/build.make libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/build
[  4%] [BISON][split_utree_t] Building parser with bison 2.3
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree && /usr/bin/bison -y -d -p pllmod_utree_ -d -o /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/split_utree.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/split_utree.y
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/build.make libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/build
[  5%] Building C object libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/__/pllmod_common.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/msa && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/__/pllmod_common.c.o -MF CMakeFiles/pllmodmsa_obj.dir/__/pllmod_common.c.o.d -o CMakeFiles/pllmodmsa_obj.dir/__/pllmod_common.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/pllmod_common.c
[  6%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/__/pllmod_common.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/__/pllmod_common.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/__/pllmod_common.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/__/pllmod_common.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/pllmod_common.c
[  7%] Building C object libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/__/pllmod_common.c.o
[  8%] Building CXX object libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/__/__/__/__/genesis_unity_sources/lib/all.cpp.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/binary && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/__/pllmod_common.c.o -MF CMakeFiles/pllmodbinary_obj.dir/__/pllmod_common.c.o.d -o CMakeFiles/pllmodbinary_obj.dir/__/pllmod_common.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/pllmod_common.c
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/genesis/lib/genesis && /opt/homebrew/Library/Homebrew/shims/mac/super/clang++ -DGENESIS_PTHREADS -DGENESIS_ZLIB -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/binary -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/msa -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/genesis/lib -std=c++14 -Wall -Wextra -Wno-unknown-pragmas -pedantic -DEPA_VERSION='"0.3.8"' -D__PREFETCH -std=c++11 -Wall -Wextra -Wno-unknown-pragmas -pedantic -pedantic-errors -O2           -DNDEBUG -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -MD -MT libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/__/__/__/__/genesis_unity_sources/lib/all.cpp.o -MF CMakeFiles/genesis_lib_static.dir/__/__/__/__/genesis_unity_sources/lib/all.cpp.o.d -o CMakeFiles/genesis_lib_static.dir/__/__/__/__/genesis_unity_sources/lib/all.cpp.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/genesis_unity_sources/lib/all.cpp
[  9%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/__/pllmod_common.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/__/pllmod_common.c.o -MF CMakeFiles/pllmodutil_obj.dir/__/pllmod_common.c.o.d -o CMakeFiles/pllmodutil_obj.dir/__/pllmod_common.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/pllmod_common.c
[ 10%] Building C object libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/__/pllmod_common.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../binary -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../msa -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../optimize -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../tree -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../util -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/__/pllmod_common.c.o -MF CMakeFiles/pllmodalgorithm_obj.dir/__/pllmod_common.c.o.d -o CMakeFiles/pllmodalgorithm_obj.dir/__/pllmod_common.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/pllmod_common.c
[ 11%] [FLEX][lex_split_t] Building scanner with flex 2.6.4
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree && /usr/bin/flex -P pllmod_utree_ -o/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/lex_split.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/lex_split.l
[ 12%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/lbfgsb.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/lbfgsb.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/lbfgsb.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/lbfgsb.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/lbfgsb/lbfgsb.c
[ 13%] [BISON][parse_rtree_t] Building parser with bison 2.3
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src && /usr/bin/bison -y -d -p pll_rtree_ -d -o /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src/parse_rtree.c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/parse_rtree.y
[ 14%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models.c.o -MF CMakeFiles/pllmodutil_obj.dir/models.c.o.d -o CMakeFiles/pllmodutil_obj.dir/models.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util/models.c
In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/genesis_unity_sources/lib/all.cpp:31:
  /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/genesis/lib/genesis/placement/formats/edge_color.hpp:34:10: fatal error: 'vector' file not found
34 | #include <vector>
  |          ^~~~~~~~
  cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/DependInfo.cmake "--color="
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build && /opt/homebrew/opt/cmake/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8 /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/DependInfo.cmake "--color="
[ 15%] Building C object libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/binary_io_operations.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/binary && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/binary_io_operations.c.o -MF CMakeFiles/pllmodbinary_obj.dir/binary_io_operations.c.o.d -o CMakeFiles/pllmodbinary_obj.dir/binary_io_operations.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/binary/binary_io_operations.c
[ 16%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linesearch.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linesearch.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linesearch.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linesearch.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/lbfgsb/linesearch.c
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/build.make libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/build
/Library/Developer/CommandLineTools/usr/bin/make  -f libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/build.make libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/build
[ 17%] Building C object libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/algo_callback.c.o
[ 18%] Building C object libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/pll_msa.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../binary -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../msa -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../optimize -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../tree -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../util -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/algo_callback.c.o -MF CMakeFiles/pllmodalgorithm_obj.dir/algo_callback.c.o.d -o CMakeFiles/pllmodalgorithm_obj.dir/algo_callback.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/algo_callback.c
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/msa && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/msa/CMakeFiles/pllmodmsa_obj.dir/pll_msa.c.o -MF CMakeFiles/pllmodmsa_obj.dir/pll_msa.c.o.d -o CMakeFiles/pllmodmsa_obj.dir/pll_msa.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/msa/pll_msa.c
[ 19%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_aa.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_aa.c.o -MF CMakeFiles/pllmodutil_obj.dir/models_aa.c.o.d -o CMakeFiles/pllmodutil_obj.dir/models_aa.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util/models_aa.c
[ 20%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/consensus.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/consensus.c.o -MF CMakeFiles/pllmodtree_obj.dir/consensus.c.o.d -o CMakeFiles/pllmodtree_obj.dir/consensus.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/consensus.c
[ 21%] Building C object libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/compress.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src && /opt/homebrew/Library/Homebrew/shims/mac/super/clang -DHAVE_X86INTRIN_H -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -O3 -fPIC  -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -MD -MT libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/compress.c.o -MF CMakeFiles/pll_obj.dir/compress.c.o.d -o CMakeFiles/pll_obj.dir/compress.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/compress.c
[ 22%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linpack.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linpack.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linpack.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/linpack.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/lbfgsb/linpack.c
[ 23%] Building C object libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/algo_search.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../binary -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../msa -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../optimize -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../tree -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../util -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/algo_search.c.o -MF CMakeFiles/pllmodalgorithm_obj.dir/algo_search.c.o.d -o CMakeFiles/pllmodalgorithm_obj.dir/algo_search.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/algo_search.c
1 error generated.
make[2]: *** [libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/__/__/__/__/genesis_unity_sources/lib/all.cpp.o] Error 1
make[1]: *** [libs/genesis/lib/genesis/CMakeFiles/genesis_lib_static.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 24%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/miniCBLAS.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/miniCBLAS.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/miniCBLAS.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/miniCBLAS.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/lbfgsb/miniCBLAS.c
In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/compress.c:22:
  In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/pll.h:50:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/x86intrin.h:15:
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/immintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
14 | #error "This header is only meant to be used on x86 and x64 architecture"
  |  ^
  In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/compress.c:22:
  In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/pll.h:50:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/x86intrin.h:15:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/immintrin.h:17:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/x86gprintrin.h:15:
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/hresetintrin.h:42:27: error: invalid input constraint 'a' in asm
42 |   __asm__ ("hreset $0" :: "a"(__eax));
|                           ^
  In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/compress.c:22:
  In file included from /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src/pll.h:50:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/x86intrin.h:15:
  In file included from /Library/Developer/CommandLineTools/usr/lib/clang/16/include/immintrin.h:21:
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:14:2: error: "This header is only meant to be used on x86 and x64 architecture"
14 | #error "This header is only meant to be used on x86 and x64 architecture"
  |  ^
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:54:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
54 |     return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:133:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
133 |     return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:163:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
163 |     return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:193:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
193 |     return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:220:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
220 |     return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:243:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
243 |     return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:264:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
264 |     return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:291:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
291 |     return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:314:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
314 |     return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:335:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
335 |     return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:356:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
356 |     return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:377:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
377 |     return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:398:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
398 |     return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:420:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size[ 25%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/subalgorithms.c.o

420 |     return (__m64)__builtin_ia32cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/subalgorithms.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/subalgorithms.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/lbfgsb/subalgorithms.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/lbfgsb/subalgorithms.c
_paddsb((__v8qi)__m1, (__v8qi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:443:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
443 |     return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  /Library/Developer/CommandLineTools/usr/lib/clang/16/include/mmintrin.h:465:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
465 |     return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2);
|            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  fatal error: too many errors emitted, stopping now [-ferror-limit=]
[ 26%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_dna.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_dna.c.o -MF CMakeFiles/pllmodutil_obj.dir/models_dna.c.o.d -o CMakeFiles/pllmodutil_obj.dir/models_dna.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util/models_dna.c
[ 27%] Building C object libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/pll_binary.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/binary && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/binary/CMakeFiles/pllmodbinary_obj.dir/pll_binary.c.o -MF CMakeFiles/pllmodbinary_obj.dir/pll_binary.c.o.d -o CMakeFiles/pllmodbinary_obj.dir/pll_binary.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/binary/pll_binary.c
[ 28%] Building C object libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/pllmod_algorithm.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/algorithm && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../binary -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../msa -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../optimize -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../tree -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/../util -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/algorithm/CMakeFiles/pllmodalgorithm_obj.dir/pllmod_algorithm.c.o -MF CMakeFiles/pllmodalgorithm_obj.dir/pllmod_algorithm.c.o.d -o CMakeFiles/pllmodalgorithm_obj.dir/pllmod_algorithm.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/algorithm/pllmod_algorithm.c
[ 29%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/opt_algorithms.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/opt_algorithms.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/opt_algorithms.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/opt_algorithms.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/opt_algorithms.c
20 errors generated.
make[2]: *** [libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/compress.c.o] Error 1
make[1]: *** [libs/pll-modules/libs/libpll/src/CMakeFiles/pll_obj.dir/all] Error 2
[ 29%] Built target pllmodmsa_obj
[ 30%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/pll_tree.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/pll_tree.c.o -MF CMakeFiles/pllmodtree_obj.dir/pll_tree.c.o.d -o CMakeFiles/pllmodtree_obj.dir/pll_tree.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/pll_tree.c
[ 31%] Building C object libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/pll_optimize.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/optimize && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/optimize/CMakeFiles/pllmodoptimize_obj.dir/pll_optimize.c.o -MF CMakeFiles/pllmodoptimize_obj.dir/pll_optimize.c.o.d -o CMakeFiles/pllmodoptimize_obj.dir/pll_optimize.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/optimize/pll_optimize.c
[ 32%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_gt.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_gt.c.o -MF CMakeFiles/pllmodutil_obj.dir/models_gt.c.o.d -o CMakeFiles/pllmodutil_obj.dir/models_gt.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util/models_gt.c
[ 33%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/rtree_operations.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/rtree_operations.c.o -MF CMakeFiles/pllmodtree_obj.dir/rtree_operations.c.o.d -o CMakeFiles/pllmodtree_obj.dir/rtree_operations.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/rtree_operations.c
[ 34%] Building C object libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_mult.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/util && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/util/CMakeFiles/pllmodutil_obj.dir/models_mult.c.o -MF CMakeFiles/pllmodutil_obj.dir/models_mult.c.o.d -o CMakeFiles/pllmodutil_obj.dir/models_mult.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/util/models_mult.c
[ 35%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tree_hashtable.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tree_hashtable.c.o -MF CMakeFiles/pllmodtree_obj.dir/tree_hashtable.c.o.d -o CMakeFiles/pllmodtree_obj.dir/tree_hashtable.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/tree_hashtable.c
[ 35%] Built target pllmodbinary_obj
[ 36%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/treeinfo.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/treeinfo.c.o -MF CMakeFiles/pllmodtree_obj.dir/treeinfo.c.o.d -o CMakeFiles/pllmodtree_obj.dir/treeinfo.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/treeinfo.c
[ 37%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o -MF CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o.d -o CMakeFiles/pllmodtree_obj.dir/tbe_functions.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/tbe_functions.c
[ 38%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o -MF CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o.d -o CMakeFiles/pllmodtree_obj.dir/utree_distances.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/utree_distances.c
[ 39%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o -MF CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o.d -o CMakeFiles/pllmodtree_obj.dir/utree_operations.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree/utree_operations.c
[ 39%] Built target pllmodalgorithm_obj
[ 39%] Built target pllmodutil_obj
[ 40%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/split_utree.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/split_utree.c.o -MF CMakeFiles/pllmodtree_obj.dir/split_utree.c.o.d -o CMakeFiles/pllmodtree_obj.dir/split_utree.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/split_utree.c
[ 41%] Building C object libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/lex_split.c.o
cd /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree && /opt/homebrew/Library/Homebrew/shims/mac/super/clang  -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/libs/libpll/src -I/tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/libs/pll-modules/src/tree -Wall -Wsign-compare -D_GNU_SOURCE -std=c99 -O3 -O3 -arch arm64 -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk -fPIC -MD -MT libs/pll-modules/src/tree/CMakeFiles/pllmodtree_obj.dir/lex_split.c.o -MF CMakeFiles/pllmodtree_obj.dir/lex_split.c.o.d -o CMakeFiles/pllmodtree_obj.dir/lex_split.c.o -c /tmp/epa-ng-20241215-25277-2u4bly/epa-ng-0.3.8/build/libs/pll-modules/src/tree/lex_split.c
[ 41%] Built target pllmodoptimize_obj
[ 41%] Built target pllmodtree_obj
make: *** [all] Error 2

HOMEBREW_VERSION: 4.4.11
ORIGIN: https://github.com/Homebrew/brew
HEAD: ad356d365837a691a52dfec32b3fb5f282f3aefc
Last commit: 6 days ago
Branch: stable
Core tap JSON: 15 Dec 13:15 UTC
Core cask tap JSON: 15 Dec 13:15 UTC
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.HfFT1fBEZE/org.xquartz:0
HOMEBREW_MAKE_JOBS: 10
HOMEBREW_NO_BOOTSNAP: set
Homebrew Ruby: 3.3.6 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.6/bin/ruby
CPU: 10-core 64-bit arm_firestorm_icestorm
Clang: 16.0.0 build 1600
Git: 2.39.5 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 8.7.1 => /usr/bin/curl
macOS: 15.1-arm64
CLT: 16.1.0.0.1.1729049160
Xcode: N/A
Rosetta 2: false

HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
  MAKEFLAGS: -j10
CMAKE_PREFIX_PATH: /opt/homebrew
CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/opt/homebrew/Library/Homebrew/os/mac/pkgconfig/15
HOMEBREW_MAKE_JOBS: 10
HOMEBREW_GIT: git
HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX15.sdk
ACLOCAL_PATH: /opt/homebrew/share/aclocal
PATH: /opt/homebrew/Library/Homebrew/shims/mac/super:/opt/homebrew/opt/cmake/bin:/usr/bin:/bin:/usr/sbin:/sbin
(base) user@MacBook-Pro-14-di-Davide ~ %

and

(base) user@MacBook-Pro-14-di-Davide ~ % brew config
HOMEBREW_VERSION: 4.4.11
ORIGIN: https://github.com/Homebrew/brew
HEAD: ad356d365837a691a52dfec32b3fb5f282f3aefc
Last commit: 6 days ago
Branch: stable
Core tap JSON: 15 Dec 13:25 UTC
Core cask tap JSON: 15 Dec 13:25 UTC
HOMEBREW_PREFIX: /opt/homebrew
HOMEBREW_CASK_OPTS: []
HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.HfFT1fBEZE/org.xquartz:0
HOMEBREW_MAKE_JOBS: 10
Homebrew Ruby: 3.3.6 => /opt/homebrew/Library/Homebrew/vendor/portable-ruby/3.3.6/bin/ruby
CPU: 10-core 64-bit arm_firestorm_icestorm
Clang: 16.0.0 build 1600
Git: 2.39.5 => /Library/Developer/CommandLineTools/usr/bin/git
Curl: 8.7.1 => /usr/bin/curl
macOS: 15.1-arm64
CLT: 16.1.0.0.1.1729049160
Xcode: N/A
Rosetta 2: false
(base) user@MacBook-Pro-14-di-Davide ~ %
@borexino
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No help for this issue?

@YoshitakaMo
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I have looked into epa-ng and found that epa-ng has not been updated for a long time. Especially, it doesn't update to support ARM64 Apple Silicon. However, if it is possible to correctly install the genesis, cereal, pll-modules and libpll-2 that it depends on, the installation may also be possible.
This problem is quite deep and needs to be investigated one by one. Please be patient.

@borexino borexino mentioned this issue Jan 3, 2025
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