Code naming convention:
.h -header for .cpp files
.cpp files containing algorithms to be ported into whatever is handling the hits etc.
.cc files for actual implementation (further described below)

The following is relevant:
~APA 1 and 3 are those currently instrumented with Felix.
~The APA-collection-channel (mod 2560-1600) counts down towards the upstream end and is between 0 and 479 for the above-specified APAs.

~The Scripts starting with "Test" are those which are a ROOT-dependent version of taking in some set of hits and then passing it t the algorithms and making a decision.

NOTES ON TODOs:

FOUND THAT THERE 

Sometimes, a candidate is issued for a higher hit threshold but not a lower... this is rare but odd...
This is likely a component of the first problem, but cannot account for all of the issues...
These issues will likely be manifestly different in the protoDUNE tests/DUNE system since they are live-time, and the aggregation of these things will be different. Have yet to decide exactly how we plan to pass the Candidates to the Module-Level...
Need to focus on the actual nitty-gritty of the BR first though... Therefore the above is being put on hold...