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AttributeError: Can't pickle local object 'get_batch_cell_embeddings..Dataset' #282

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thinkCodeai opened this issue Jan 23, 2025 · 0 comments

thinkCodeai commented Jan 23, 2025 •

edited

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I am running Tutorial_ZeroShot_Reference_Mapping.ipynb

ref_embed_adata = scg.tasks.embed_data(
adata,
model_dir,
gene_col=gene_col,
batch_size=64,
device = 'cpu',
use_fast_transformer=False
)

and I am getting this error
AttributeError: Can't pickle local object 'get_batch_cell_embeddings..Dataset'

thinkCodeai changed the title ~~scGPT installation~~ AttributeError: Can't pickle local object 'get_batch_cell_embeddings..Dataset'

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