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BLASTP 2.2.29+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: PDB protein database
72,787 sequences; 17,663,582 total letters
Query= p01
Length=461
RID: 2D87KDRD014
Score E
Sequences producing significant alignments: (Bits) Value
pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Ca... 184 4e-52
pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephor... 183 8e-52
pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Ca... 181 1e-50
pdb|4KE4|A Chain A, Elucidation Of The Structure And Reaction Me... 174 2e-48
pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase >pdb|... 110 3e-26
pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malon... 75.9 2e-14
pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium... 63.2 2e-10
pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium... 59.3 3e-09
pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bo... 33.1 0.63
pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (T... 33.1 0.64
pdb|1PT5|A Chain A, Crystal Structure Of Gene Yfdw Of E. Coli >p... 30.0 4.5
pdb|4KBR|A Chain A, Crystal Structure Of Mouse Ceramide-1-phosph... 29.6 4.8
pdb|1Q6Y|A Chain A, Hypothetical Protein Yfdw From E. Coli Bound... 30.0 4.9
pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arct... 29.3 6.6
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length=439
Score = 184 bits (467), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 138/452 (31%), Positives = 219/452 (48%), Gaps = 48/452 (11%)
Query 7 TFRVTRQKPELVRPAKSTPRECKRLSDIDDQEGLRFQVPVIQFYRSDDDHLHSRRDPVKV 66
+ ++ ++ +VRPA+ TP S++D F P + FYR S KV
Sbjct 5 SMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPTGS---SNFFDAKV 60
Query 67 IREAIAKALVSYYPFAGRLRECAGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPPFPC 126
+++A+++ALV +YP AGRL+ ++ +C GEGV+F+EA+++ ++ FG+ P
Sbjct 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD--FAPTLE 118
Query 127 LEELLYDVPESAGVLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFMNAVGEIAR 186
L L+ V S G+ LL++QVT +CGG V + H ADG + F+N+ ++AR
Sbjct 119 LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query 187 GASAPSVLPVWQRERLNARDPPRVTCIHHEY---------------DEVPDTKGTIIPLD 231
G ++ P R L ARDPP+ H EY D VP+T +I L
Sbjct 179 GLDV-TLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLT 237
Query 232 DMVHRSFFFGPTEVSALR-KSIPLDISRKCSTFEVLTACLWRCRTIALQPEPNEEVRVIC 290
++SAL+ KS + S++E+L +WRC A E ++ ++
Sbjct 238 R----------EQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYI 287
Query 291 VVNARSKFDPPLPQGYYGNGFAFPVALTTAGELCKRPLGYALELVTKAKGDVTEDYMKSV 350
+ R++ P LP GY+GN + AG+L +P+ YA + A + DY++S
Sbjct 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 347
Query 351 ADLM--------VIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAIP 402
D + +++G F + S V R+ ++ DFGWGRP + GP GG+ A
Sbjct 348 LDYLELQPDLKALVRGAHTFKXPNLGITSWV-RLPIHDADFGWGRPIFMGP--GGI-AYE 403
Query 403 GLLSFYIPVTNRNGEKGRVVPICLPGFAMDRF 434
G LSF +P +G V I L G M F
Sbjct 404 G-LSFILPSPTNDGSMS--VAISLQGEHMKLF 432
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length=436
Score = 183 bits (465), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 138/452 (31%), Positives = 218/452 (48%), Gaps = 48/452 (11%)
Query 7 TFRVTRQKPELVRPAKSTPRECKRLSDIDDQEGLRFQVPVIQFYRSDDDHLHSRRDPVKV 66
++ ++ +VRPA+ TP S++D F P + FYR S KV
Sbjct 2 AMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPTGS---SNFFDAKV 57
Query 67 IREAIAKALVSYYPFAGRLRECAGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPPFPC 126
+++A+++ALV +YP AGRL+ ++ +C GEGV+F+EA+++ ++ FG+ P
Sbjct 58 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD--FAPTLE 115
Query 127 LEELLYDVPESAGVLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFMNAVGEIAR 186
L L+ V S G+ LL++QVT +CGG V + H ADG + F+N+ ++AR
Sbjct 116 LRRLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 175
Query 187 GASAPSVLPVWQRERLNARDPPRVTCIHHEY---------------DEVPDTKGTIIPLD 231
G ++ P R L ARDPP+ H EY D VP+T +I L
Sbjct 176 GLDV-TLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLT 234
Query 232 DMVHRSFFFGPTEVSALR-KSIPLDISRKCSTFEVLTACLWRCRTIALQPEPNEEVRVIC 290
++SAL+ KS + S++E+L +WRC A E ++ ++
Sbjct 235 R----------EQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYI 284
Query 291 VVNARSKFDPPLPQGYYGNGFAFPVALTTAGELCKRPLGYALELVTKAKGDVTEDYMKSV 350
+ R++ P LP GY+GN + AG+L +P+ YA + A + DY++S
Sbjct 285 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 344
Query 351 ADLM--------VIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAIP 402
D + +++G F + S V R+ ++ DFGWGRP + GP GG+ A
Sbjct 345 LDYLELQPDLKALVRGAHTFKCPNLGITSWV-RLPIHDADFGWGRPIFMGP--GGI-AYE 400
Query 403 GLLSFYIPVTNRNGEKGRVVPICLPGFAMDRF 434
G LSF +P +G V I L G M F
Sbjct 401 G-LSFILPSPTNDGSMS--VAISLQGEHMKLF 429
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length=439
Score = 181 bits (458), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 137/452 (30%), Positives = 218/452 (48%), Gaps = 48/452 (11%)
Query 7 TFRVTRQKPELVRPAKSTPRECKRLSDIDDQEGLRFQVPVIQFYRSDDDHLHSRRDPVKV 66
+ ++ ++ +VRPA+ TP S++D F P + FYR S KV
Sbjct 5 SMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPTGS---SNFFDAKV 60
Query 67 IREAIAKALVSYYPFAGRLRECAGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPPFPC 126
+++A+++ALV +YP AGRL+ ++ +C GEGV+F+EA+++ ++ FG+ P
Sbjct 61 LKDALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD--FAPTLE 118
Query 127 LEELLYDVPESAGVLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFMNAVGEIAR 186
L L+ V S G+ LL++QVT + GG V + H ADG + F+N+ ++AR
Sbjct 119 LRRLIPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMAR 178
Query 187 GASAPSVLPVWQRERLNARDPPRVTCIHHEY---------------DEVPDTKGTIIPLD 231
G ++ P R L ARDPP+ H EY D VP+T +I L
Sbjct 179 GLDV-TLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLT 237
Query 232 DMVHRSFFFGPTEVSALR-KSIPLDISRKCSTFEVLTACLWRCRTIALQPEPNEEVRVIC 290
++SAL+ KS + S++E+L +WRC A E ++ ++
Sbjct 238 R----------EQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYI 287
Query 291 VVNARSKFDPPLPQGYYGNGFAFPVALTTAGELCKRPLGYALELVTKAKGDVTEDYMKSV 350
+ R++ P LP GY+GN + AG+L +P+ YA + A + DY++S
Sbjct 288 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 347
Query 351 ADLM--------VIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAIP 402
D + +++G F + S V R+ ++ DFGWGRP + GP GG+ A
Sbjct 348 LDYLELQPDLKALVRGAHTFKXPNLGITSWV-RLPIHDADFGWGRPIFMGP--GGI-AYE 403
Query 403 GLLSFYIPVTNRNGEKGRVVPICLPGFAMDRF 434
G LSF +P +G V I L G M F
Sbjct 404 G-LSFILPSPTNDGSMS--VAISLQGEHMKLF 432
>pdb|4KE4|A Chain A, Elucidation Of The Structure And Reaction Mechanism
Of Sorghum Bicolor Hydroxycinnamoyltransferase And Its Structural
Relationship To Other Coa-dependent Transferases And Synthases
pdb|4KEC|A Chain A, Sbhct-complex Form
Length=448
Score = 174 bits (441), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 213/453 (47%), Gaps = 38/453 (8%)
Query 8 FRVTRQKPELVRPAKSTPRECKRLSDID-DQEGLRFQVPVIQFYR---SDDDHLHSRRDP 63
++T + E+V PA TPR +RL + D RF P + F+R +D + L +
Sbjct 1 MKITVRGSEMVYPAAETPR--RRLWNSGPDLVVPRFHTPSVYFFRRRDADGNDLTAADGS 58
Query 64 V---KVIREAIAKALVSYYPFAGRLRECAGRKLVADCTGEGVMFIEADA-EVTLEQFGEE 119
+R A+A+ALV +YP AGRL ++ DC GV+F EADA + T++ FG+
Sbjct 59 FFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAAGVLFQEADAPDATIDYFGDF 118
Query 120 LQPPFPCLEELLYDVPESAGVLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFMN 179
P L+ L+ V S PLL++QVT +CGG V + H +ADG + F+N
Sbjct 119 A--PTMELKRLIPTVDFSDDTAF-PLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFIN 175
Query 180 AVGEIARGASAPSVLPVWQRERLNARDPPRVTCIHHEYDEVPDTKGTIIPLDDMVHRS-- 237
+ ++ RG +V+P R L ARDPP H EY P + P + +
Sbjct 176 SWADLCRGVPI-AVMPFIDRSLLRARDPPAPVYPHVEYQPAPAMLSSEPPQAALTAKPAT 234
Query 238 -------FFFGPTEVSALRKSIPL---DISRKCSTFEVLTACLWRCRTIALQPEPNEEVR 287
F E+ LR +P + + + ST+ VL A +WRC ++A ++ +
Sbjct 235 PPAAVAIFKLSRAELGRLRSQVPAREREGAPRFSTYAVLAAHVWRCASLARGLPADQPTK 294
Query 288 VICVVNARSKFDPPLPQGYYGNGFAFPVALTTAGELC------KRPLGYALELVTKAKGD 341
+ C + R + PPLP+GY+GN L AG + + AL+ +
Sbjct 295 LYCATDGRQRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGAAVIQAALDRMDDGYCR 354
Query 342 VTEDYMKSVADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAI 401
DY++ DL + H ++ R+ ++ DFGWGRP + GP GG+ A
Sbjct 355 SALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGP--GGI-AY 411
Query 402 PGLLSFYIPVTNRNGEKGRVVPICLPGFAMDRF 434
G L+F +P NR+G V I L M++F
Sbjct 412 EG-LAFVLPSANRDGSLS--VAISLQAEHMEKF 441
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length=421
Score = 110 bits (274), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/400 (27%), Positives = 183/400 (46%), Gaps = 55/400 (14%)
Query 9 RVTRQKPELVRPAKSTPR--ECKRLSDIDDQEGLRFQVPVIQFYRSDDDHLHSRRDPVKV 66
++ + EL+ P+ TP+ +C ++S +D Q L +P I FY + L S DP +
Sbjct 4 QMEKVSEELILPSSPTPQSLKCYKISHLD-QLLLTCHIPFILFYP---NPLDSNLDPAQT 59
Query 67 ---IREAIAKALVSYYPFAGRLRECAGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPP 123
++++++K L +YP AGR+ + DC GV F+EA + L Q + +
Sbjct 60 SQHLKQSLSKVLTHFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAIQNVVE- 114
Query 124 FPCLEELLYDVPESA------GVLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQF 177
LE+L +P +A V L ++++ CGG V L+H IAD L F
Sbjct 115 ---LEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATF 171
Query 178 MNAVGEIARGASAPSVLPVWQRERLNARDPPRVTCIHHEYDEVPDTKGTIIPLDDMVHRS 237
+NA RG + VLP + L AR P V D P + ++P +++V +
Sbjct 172 LNAWTATCRGETE-IVLPNFD---LAARHFPPV-------DNTPSPE--LVPDENVVMKR 218
Query 238 FFFGPTEVSALR-KSIPLDISRKCSTFEVLTACLWRCRTIALQPEPNEEVRVICV--VNA 294
F F ++ ALR ++ + S +++ A +W+ + + + + + V VN
Sbjct 219 FVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNL 278
Query 295 RSKFDPPLPQGYYGNGFAFPVALTTAGELCKR------PLGYALELVTKAKGDVTEDYMK 348
RS+ +PPLP GN A A E K PL +LE K + D + +K
Sbjct 279 RSRMNPPLPHYAMGNIATLLFAAVDA-EWDKDFPDLIGPLRTSLE---KTEDDHNHELLK 334
Query 349 SVADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRP 388
+ L ++ + + + R+GF ++DFGWG+P
Sbjct 335 GMTCLYELEPQELLS------FTSWCRLGFYDLDFGWGKP 368
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length=453
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/364 (26%), Positives = 154/364 (42%), Gaps = 43/364 (12%)
Query 59 SRRDPVKVI----REAIAKALVSYYPFAGRL---RECAGRKLVADCTGEGV--MFIEADA 109
SR D V+ I +++++ L Y P AG + ++ +G + TG V +F E+D
Sbjct 48 SRPDFVQTIIPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDX 107
Query 110 EVT-LEQFGEELQPPFPCLEELLYDVPESAGVLHSPLLLIQVTRLRCGGFIFAVRLNHTI 168
+ L + F L + ++ GV +P+L IQVT G +H
Sbjct 108 DFNYLIGYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVA 167
Query 169 ADGTGLVQFMNAVGEIARGAS-----APSVLPVWQRERLNARDPPRV-TCIHHE---YDE 219
DG +V+F+ A + + A +P + R + +DP V I +E Y
Sbjct 168 GDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVI--KDPNGVGXSIWNEXKKYKH 225
Query 220 VPDTKGTIIPLDDMVHRSFFFGPTEVSALRKSIPLDISRK-----CSTFEVLTACLWRCR 274
+ P D V +F ++ L+ L ++R+ ++F V A +W C
Sbjct 226 XXKXSDVVTP-PDKVRGTFIITRHDIGKLKN---LVLTRRPKLTHVTSFTVTCAYVWTC- 280
Query 275 TIALQPEPNEEVR------VICVVNARSKFDPPLPQGYYGNGFAFPVALTTAGELC-KRP 327
I + EE+ C + R++F+PPLP Y+GN VA T +L K
Sbjct 281 IIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEG 340
Query 328 LGYALELVTKA--KGDVTEDYMKSVADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGW 385
A+EL+ +A K E+++ S + K A R+ V+ ++ DFGW
Sbjct 341 FTIAVELIGEAIRKRXKDEEWILSGS---WFKEYDKVDAKRSLSVAGSPKLDLYAADFGW 397
Query 386 GRPE 389
GRPE
Sbjct 398 GRPE 401
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat Complexed
With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat Complexed
With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length=454
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 90/356 (25%), Positives = 143/356 (40%), Gaps = 50/356 (14%)
Query 67 IREAIAKALVSYYPFAGRLREC-AGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPPFP 125
I+ +++ L +YPF G+L A K C EG AE L+ EL P
Sbjct 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL--NELTGNHP 122
Query 126 CLEELLYDVPESAG-------VLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFM 178
+ YD+ G + PL +QVT G + +H + D + F+
Sbjct 123 RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query 179 NAVGEIARGAS------APSVLPVWQR----ERLNARDPPRVTCIHHEYDEVPDTKGTII 228
A IAR + A P++ R L+ R D V T+
Sbjct 183 KAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYV--TQSLAG 240
Query 229 PLDDMVHRSFFFGPTEVSALRKSI--PLDISRKCSTFEVLTACLWRCRTIALQPEPNEEV 286
P D + +F ++ L+ + L S+F V A +W C + N+++
Sbjct 241 P-SDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSC----IAKSRNDKL 295
Query 287 RVICV-VNARSKFDPPLPQGYYGN--GFAFPVALT----------TAGELCKRPLGYALE 333
++ ++ R++ PP+P Y+GN G +A T TA +L L L
Sbjct 296 QLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL- 354
Query 334 LVTKAKGDVTEDYMKSVADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPE 389
T K V +D M+S DL V +G P T+V S ++ F ++DFGWG+P+
Sbjct 355 --TDYKDGVLKDDMESFNDL-VSEGMP---TTMTWV-SGTPKLRFYDMDFGWGKPK 403
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length=454
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 141/356 (40%), Gaps = 50/356 (14%)
Query 67 IREAIAKALVSYYPFAGRLREC-AGRKLVADCTGEGVMFIEADAEVTLEQFGEELQPPFP 125
I+ +++ L +YPF G+L A K C EG AE L+ EL P
Sbjct 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL--NELTGNHP 122
Query 126 CLEELLYDVPESAG-------VLHSPLLLIQVTRLRCGGFIFAVRLNHTIADGTGLVQFM 178
+ YD+ G + PL +QVT G + +H + D + F+
Sbjct 123 RNCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query 179 NAVGEIARGAS------APSVLPVWQR----ERLNARDPPRVTCIHHEYDEVPDTKGTII 228
A IAR + A P++ R L+ R D V T+
Sbjct 183 KAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYV--TQSLAG 240
Query 229 PLDDMVHRSFFFGPTEVSALRKSI--PLDISRKCSTFEVLTACLWRCRTIALQPEPNEEV 286
P D + +F ++ L+ + L S+F V A +W C + N+++
Sbjct 241 P-SDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSC----IAKSRNDKL 295
Query 287 RVICV-VNARSKFDPPLPQGYYGN--GFAFPVALT----------TAGELCKRPLGYALE 333
++ ++ R++ PP+P Y+GN G +A T TA +L L L
Sbjct 296 QLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTL- 354
Query 334 LVTKAKGDVTEDYMKSVADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPE 389
T K V +D +S DL V +G P T+V S ++ F + DFGWG+P+
Sbjct 355 --TDYKDGVLKDDXESFNDL-VSEGXP---TTXTWV-SGTPKLRFYDXDFGWGKPK 403
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
Length=793
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query 287 RVICVVNARSKFDPPLPQGYYGNGFAFPVALTTAGEL-CKRPLGYALELVTKAKGDVTED 345
R++ V+ + DP + Y G+ FAFP L A +L K PLG D +E
Sbjct 215 RLVKVIREK---DPDVIITYNGDNFAFPYLLKRAEKLGIKLPLG----------RDNSEP 261
Query 346 YMKSVADLMV--IKGRPHF 362
M+ + D + IKGR HF
Sbjct 262 KMQRMGDSLAVEIKGRIHF 280
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
Bound To A Dsdna, In Edition Mode
Length=793
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query 287 RVICVVNARSKFDPPLPQGYYGNGFAFPVALTTAGEL-CKRPLGYALELVTKAKGDVTED 345
R++ V+ + DP + Y G+ FAFP L A +L K PLG D +E
Sbjct 215 RLVKVIREK---DPDVIITYNGDNFAFPYLLKRAEKLGIKLPLG----------RDNSEP 261
Query 346 YMKSVADLM--VIKGRPHF 362
M+ + D + IKGR HF
Sbjct 262 KMQRMGDSLAVAIKGRIHF 280
>pdb|1PT5|A Chain A, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT5|B Chain B, Crystal Structure Of Gene Yfdw Of E. Coli
pdb|1PT7|A Chain A, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT7|B Chain B, Crystal Structure Of The Apo-Form Of The Yfdw Gene Product
Of E. Coli
pdb|1PT8|A Chain A, Crystal Structure Of The Yfdw Gene Product Of E. Coli,
In Complex With Oxalate And Acetyl-Coa
pdb|1PT8|B Chain B, Crystal Structure Of The Yfdw Gene Product Of E. Coli,
In Complex With Oxalate And Acetyl-Coa
Length=437
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (39%), Gaps = 10/108 (9%)
Query 350 VADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAIPGLLSFYI 409
V D ++ P T + + +DV +I RP G + + IP + + Y
Sbjct 31 VLDFTGVQSGPSCTQMLAWFGADVIKIE---------RPGVGDVTRHQLRDIPDIDALYF 81
Query 410 PVTNRNGEKGRVVPICLPGF-AMDRFVRELEKLLSNNHHSIIDRSTFV 456
+ N N + G M++ +RE + L+ N H ID F
Sbjct 82 TMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFT 129
>pdb|4KBR|A Chain A, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|B Chain B, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|C Chain C, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|D Chain D, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|E Chain E, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|F Chain F, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|G Chain G, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
pdb|4KBR|H Chain H, Crystal Structure Of Mouse Ceramide-1-phosphate Transfer
Protein (apo- Form)
Length=217
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (38%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query 162 VRLNHTIADGTGLVQFMNAVGEIARGASAPSVLPVWQRERLNARDPPR 209
V L+H IA GLV+F+N++G + S V + ERL R P+
Sbjct 28 VLLDHYIAGWKGLVRFLNSLGAVFSFISKDVVAKLQIMERL--RSSPQ 73
>pdb|1Q6Y|A Chain A, Hypothetical Protein Yfdw From E. Coli Bound To Coenzyme
A
Length=428
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (39%), Gaps = 10/108 (9%)
Query 350 VADLMVIKGRPHFTAVRTYVVSDVTRIGFNEVDFGWGRPEYGGPAKGGVGAIPGLLSFYI 409
V D ++ P T + + +DV +I RP G + + IP + + Y
Sbjct 12 VLDFTGVQSGPSCTQMLAWFGADVIKIE---------RPGVGDVTRHQLRDIPDIDALYF 62
Query 410 PVTNRNGEKGRVVPICLPGF-AMDRFVRELEKLLSNNHHSIIDRSTFV 456
+ N N + G M++ +RE + L+ N H ID F
Sbjct 63 TMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFT 110
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length=329
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/56 (34%), Positives = 27/56 (48%), Gaps = 1/56 (2%)
Query 391 GGPAKGGVGAIPGLLSFYIPVTNRNGEKGRVVPICLPGFAMDRFVRELEKLLSNNH 446
G P+ G G IP + F PVT NGE V + + F+ +R L +LL +
Sbjct 268 GIPSDGSYG-IPEGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQN 322
Lambda K H
0.324 0.141 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 0
Query= p02
Length=333
RID: 2D87KDRD014
Score E
Sequences producing significant alignments: (Bits) Value
pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porc... 410 3e-142
pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Mal... 410 3e-142
pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Ma... 336 4e-113
pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase Fr... 331 3e-111
pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase Fr... 330 5e-111
pdb|4KDE|A Chain A, Crystal Structure Of The Apo Form Of Thermus... 330 5e-111
pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Obse... 329 8e-111
pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of... 327 6e-110
pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arct... 324 1e-108
pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor ... 322 7e-108
pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogen... 239 9e-75
pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A C... 235 2e-73
pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase Fr... 87.8 2e-19
pdb|4PLH|A Chain A, Crystal Structure Of Ancestral Apicomplexan ... 76.6 2e-15
pdb|4BGV|A Chain A, 1.8 A Resolution Structure Of The Malate Deh... 67.4 2e-12
pdb|4PLT|B Chain B, Crystal Structure Of Ancestral Apicomplexan ... 67.4 2e-12
pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogen... 67.0 4e-12
pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate De... 63.9 3e-11
pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydro... 63.5 5e-11
pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGE... 62.8 7e-11
pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein St... 60.8 3e-10
pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, Th... 60.5 4e-10
pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein St... 60.1 6e-10
pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum ... 60.1 6e-10
pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein St... 59.3 1e-09
pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli ... 53.9 6e-08
pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Es... 53.5 8e-08
pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase ... 53.1 9e-08
pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure O... 52.0 2e-07
pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability O... 50.8 5e-07
pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein St... 50.8 5e-07
pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability O... 50.8 5e-07
pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactat... 50.1 1e-06
pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate De... 50.1 1e-06
pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase... 48.9 2e-06
pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydro... 48.5 3e-06
pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari >pd... 48.5 4e-06
pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-... 48.1 5e-06
pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-... 48.1 5e-06
pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium The... 47.8 5e-06
pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On... 47.4 7e-06
pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase... 47.0 1e-05
pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase F... 46.6 1e-05
pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-... 46.6 1e-05
pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s)... 46.6 1e-05
pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate ... 46.2 2e-05
pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate De... 46.2 2e-05
pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type ... 46.2 2e-05
pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A H... 46.2 2e-05
pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic M... 46.2 2e-05
pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase... 45.8 2e-05
pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain... 45.8 2e-05
pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-... 45.8 2e-05
pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydro... 45.8 2e-05
pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Com... 45.8 2e-05
pdb|4L4R|A Chain A, Structural Characterisation Of The Apo-form ... 45.8 3e-05
pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-... 44.7 6e-05
pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl... 44.3 7e-05
pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of P... 44.3 7e-05
pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On T... 43.1 2e-04
pdb|4PLC|A Chain A, Crystal Structure Of Ancestral Apicomplexan ... 42.7 2e-04
pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain,... 42.7 3e-04
pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With... 42.7 3e-04
pdb|4LMR|A Chain A, Crystal Structure Of L-lactate Dehydrogenase... 42.4 3e-04
pdb|3WSV|A Chain A, Crystal Structure Of Minor L-lactate Dehydro... 40.8 0.001
pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Mariti... 40.4 0.001
pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase F... 40.4 0.001
pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase F... 40.0 0.001
pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase M... 40.0 0.002
pdb|4M1Q|A Chain A, Crystal Structure Of L-lactate Dehydrogenase... 39.7 0.003
pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase F... 37.4 0.012
pdb|3VPG|A Chain A, L-lactate Dehydrogenase From Thermus Caldoph... 36.6 0.024
pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus The... 36.2 0.030
pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus ... 35.8 0.042
pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase F... 35.8 0.043
pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate... 35.4 0.057
pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfis... 32.3 0.51
pdb|1NAS|A Chain A, Sepiapterin Reductase Complexed With N-acety... 31.2 1.2
pdb|1SEP|A Chain A, Mouse Sepiapterin Reductase Complexed With N... 30.8 1.3
pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogena... 29.6 3.7
pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Thr... 29.6 3.8
pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical ... 28.9 3.9
pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Orni... 29.6 4.0
pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Bru... 29.6 4.1
pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei... 29.3 4.6
pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast... 29.3 4.7
pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast... 29.3 5.0
pdb|4JX0|A Chain A, Crystal Structure Of A Hypothetical Protein ... 29.3 5.4
pdb|1GX3|A Chain A, M. Smegmatis Arylamine N-Acetyl Transferase ... 28.9 6.5
pdb|2VN4|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase F... 28.9 6.8
pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (... 28.5 6.9
pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarb... 28.9 7.3
pdb|1W6F|A Chain A, Arylamine N-Acetyltransferase From Mycobacte... 28.5 7.8
pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase F... 28.5 8.7
pdb|2GGS|A Chain A, Crystal Structure Of Hypothetical Dtdp-4-Deh... 28.1 9.2
pdb|1W5R|A Chain A, X-Ray Crystallographic Strcuture Of A C70q M... 28.1 9.8
pdb|2BE7|D Chain D, Crystal Structure Of The Unliganded (T-State... 27.7 9.9
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic
Malate Dehydrogenase Alpha-Ketomalonate And Tnad At
2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic
Malate Dehydrogenase Alpha-Ketomalonate And Tnad At
2.4 Angstroms Resolution
Length=333
Score = 410 bits (1053), Expect = 3e-142, Method: Compositional matrix adjust.
Identities = 201/330 (61%), Positives = 245/330 (74%), Gaps = 1/330 (0%)
Query 4 DPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
+P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 61
Query 64 PLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAAP 123
PLLK V+AT A + VA++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct 62 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 121
Query 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNAI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +LGV DVKN I
Sbjct 122 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 181
Query 184 IWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSSTQYPDVNHA VK A E V + V DD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct 182 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
Query 244 ALSAASAACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCKNGEWSIVQG 302
A+SAA A CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT K+ W IV+G
Sbjct 242 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 301
Query 303 RSIDEFSRKKMDATAAELSEEKDLAYSCLS 332
I++FSR+KMD TA EL+EEK+ A+ LS
Sbjct 302 LPINDFSREKMDLTAKELAEEKETAFEFLS 331
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase
At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase
At 2.5-Angstroms Resolution
Length=334
Score = 410 bits (1053), Expect = 3e-142, Method: Compositional matrix adjust.
Identities = 201/330 (61%), Positives = 245/330 (74%), Gaps = 1/330 (0%)
Query 4 DPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAAF 63
+P+RVLVTGAAGQI Y+L+ I G + G DQP+IL +LDI P L+GV MEL D A
Sbjct 3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL 62
Query 64 PLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAAP 123
PLLK V+AT A + VA++VG PR++GMERKD++ NV I+K Q +AL+++A
Sbjct 63 PLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKK 122
Query 124 NCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNAI 183
+ KV+VV NPANTN L + APSIP +N +CLTRLDHNRA QI+ +LGV DVKN I
Sbjct 123 SVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVI 182
Query 184 IWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLSS 243
IWGNHSSTQYPDVNHA VK A E V + V DD+WL GEFITTVQQRGAA+IKARKLSS
Sbjct 183 IWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
Query 244 ALSAASAACDHIRDWVLGTPEGTWVSMGVYSDG-SYNVPAGLIYSFPVTCKNGEWSIVQG 302
A+SAA A CDH+RD GTPEG +VSMG+ SDG SY VP L+YSFPVT K+ W IV+G
Sbjct 243 AMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEG 302
Query 303 RSIDEFSRKKMDATAAELSEEKDLAYSCLS 332
I++FSR+KMD TA EL+EEK+ A+ LS
Sbjct 303 LPINDFSREKMDLTAKELAEEKETAFEFLS 332
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase
From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase
From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase
From Leishmania Major Friedlin In Complex With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase
From Leishmania Major Friedlin In Complex With Nad
Length=345
Score = 336 bits (861), Expect = 4e-113, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 229/321 (71%), Gaps = 7/321 (2%)
Query 6 VRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAAFPL 65
V+V VTGAAGQIGYALVP+IARG +LGP PV L +LDI PA +AL GV+ EL D AFPL
Sbjct 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL 84
Query 66 LKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAAPNC 125
L VV T D A GV++A+M G FPRK GMERKD++ N I+K Q A+ AA +C
Sbjct 85 LDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDC 144
Query 126 KVLVVANPANTNALI-LKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNAII 184
+V+VV NPANTNALI LK + +++T +TRLDHNRAL ++ + GV VS V+N II
Sbjct 145 RVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVII 204
Query 185 WGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLSSA 244
WGNHSSTQ PD + A + T+ P R+ + DDA L+ +F+ V+ RGA II+ R LSSA
Sbjct 205 WGNHSSTQVPDTDSAVIGTT----PAREAIKDDA-LDDDFVQVVRGRGAEIIQLRGLSSA 259
Query 245 LSAASAACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCKNGEWSIVQGR 303
+SAA AA DH+ DW+ GTPEG +VSMGVYSD + Y VP+GLI+SFP TC GEW++V G+
Sbjct 260 MSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHAGEWTVVSGK 319
Query 304 SIDEFSRKKMDATAAELSEEK 324
+ ++++ +T AEL EE+
Sbjct 320 LNGDLGKQRLASTIAELQEER 340
>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia
Pseudomallei
pdb|3D5T|B Chain B, Crystal Structure Of Malate Dehydrogenase From Burkholderia
Pseudomallei
pdb|3D5T|C Chain C, Crystal Structure Of Malate Dehydrogenase From Burkholderia
Pseudomallei
pdb|3D5T|D Chain D, Crystal Structure Of Malate Dehydrogenase From Burkholderia
Pseudomallei
Length=331
Score = 331 bits (848), Expect = 3e-111, Method: Compositional matrix adjust.
Identities = 179/325 (55%), Positives = 223/325 (69%), Gaps = 5/325 (2%)
Query 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVD 60
MAK RV VTGAAGQI Y+L+ IA G +LG DQPVIL +LD+P A A+ GV MEL D
Sbjct 5 MAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELDD 64
Query 61 AAFPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQH 120
AFPLL GVV T D A VA++VG PR +GMERKD+++ N I+ Q +AL +
Sbjct 65 CAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEV 124
Query 121 AAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVK 180
A+ + KVLVV NPANTNA I + AP +P KN T + RLDHNRAL Q++ + G V+ ++
Sbjct 125 ASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLRLDHNRALSQLAAKSGKPVASIE 184
Query 181 NAIIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARK 240
+WGNHS T YPD AT + GE + +L+ DD W FI TV +RGAAII+AR
Sbjct 185 KLAVWGNHSPTMYPDFRFATAE---GES-LLKLINDDVWNRDTFIPTVGKRGAAIIEARG 240
Query 241 LSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIV 300
LSSA SAA+AA DH+RDWVLGT G WV+MG+ SDGSY +P +IY PV C+NGE+ V
Sbjct 241 LSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVICENGEYKRV 299
Query 301 QGRSIDEFSRKKMDATAAELSEEKD 325
+G ID FSR+KMD T AEL EE+D
Sbjct 300 EGLEIDAFSREKMDGTLAELLEERD 324
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(h)-dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(h)-dependent Malate Dehydrogenase
Complexed With Nadph
Length=327
Score = 330 bits (846), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 221/323 (68%), Gaps = 5/323 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
FPLL G+ AT D A A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ G V ++
Sbjct 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P +LV D W FI TV QRGAAII+AR S
Sbjct 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIVQG 302
SA SAA+AA +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT K+G + +V+G
Sbjct 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query 303 RSIDEFSRKKMDATAAELSEEKD 325
I+EF+RK+M+ TA EL +E +
Sbjct 297 LEINEFARKRMEITAQELLDEME 319
>pdb|4KDE|A Chain A, Crystal Structure Of The Apo Form Of Thermus Thermophilus
Malate Dehydrogenase
pdb|4KDE|B Chain B, Crystal Structure Of The Apo Form Of Thermus Thermophilus
Malate Dehydrogenase
pdb|4KDF|A Chain A, Crystal Structure Of Thermus Thermophilus Malate Dehydrogenase
In Complex With Nad
pdb|4KDF|B Chain B, Crystal Structure Of Thermus Thermophilus Malate Dehydrogenase
In Complex With Nad
pdb|4KDF|C Chain C, Crystal Structure Of Thermus Thermophilus Malate Dehydrogenase
In Complex With Nad
pdb|4KDF|D Chain D, Crystal Structure Of Thermus Thermophilus Malate Dehydrogenase
In Complex With Nad
Length=341
Score = 330 bits (847), Expect = 5e-111, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 221/323 (68%), Gaps = 5/323 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
FPLL G+ AT D A A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ G V ++
Sbjct 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P +LV D W FI TV QRGAAII+AR S
Sbjct 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIVQG 302
SA SAA+AA +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT K+G + +V+G
Sbjct 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query 303 RSIDEFSRKKMDATAAELSEEKD 325
I+EF+RK+M+ TA EL +E +
Sbjct 297 LEINEFARKRMEITAQELLDEME 319
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In
The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In
The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length=327
Score = 329 bits (844), Expect = 8e-111, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 221/323 (68%), Gaps = 5/323 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
FPLL G+ AT D A A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ G V ++
Sbjct 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P +LV D W FI TV QRGAAII+AR S
Sbjct 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIVQG 302
SA SAA+AA +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT K+G + +V+G
Sbjct 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query 303 RSIDEFSRKKMDATAAELSEEKD 325
I+EF+RK+M+ TA EL +E +
Sbjct 297 LEINEFARKRMEITAQELLDEME 319
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single
Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus
With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single
Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus
With Increased Enzymatic Activity
Length=327
Score = 327 bits (838), Expect = 6e-110, Method: Compositional matrix adjust.
Identities = 175/323 (54%), Positives = 220/323 (68%), Gaps = 5/323 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L+IP A +AL GV MEL D A
Sbjct 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
FPLL G+ AT D A A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct 62 FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ G V ++
Sbjct 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSS +PD+ HA V +P +LV D W FI TV QRGAAII+AR S
Sbjct 182 TVWGNHSSIMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIVQG 302
SA SAA+AA +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT K+G + +V+G
Sbjct 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query 303 RSIDEFSRKKMDATAAELSEEKD 325
I+EF+RK+M+ TA EL +E +
Sbjct 297 LEINEFARKRMEITAQELLDEME 319
>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8U|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
pdb|1B8V|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum
Length=329
Score = 324 bits (830), Expect = 1e-108, Method: Compositional matrix adjust.
Identities = 175/327 (54%), Positives = 224/327 (69%), Gaps = 7/327 (2%)
Query 1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIP--PAAEALNGVKMEL 58
MAK P+RV VTGAAGQI Y+L+ IA G MLG DQPVIL +L+IP A +AL GV ME+
Sbjct 1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI 60
Query 59 VDAAFPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALE 118
D AFPLL G+ A D A VA++VG PR GMERKD++ N I+ Q A++
Sbjct 61 DDCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120
Query 119 QHAAPNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSD 178
A+ N KVLVV NPANTNA I + APS+PAKN T + RLDHNRAL QI+ + G VS
Sbjct 121 AVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query 179 VKNAIIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKA 238
++ +WGNHS T Y D +A + ++ V+ ++ DDAW F+ TV +RGAAII A
Sbjct 181 IEKLFVWGNHSPTMYADYRYAQIDGAS----VKDMINDDAWNRDTFLPTVGKRGAAIIDA 236
Query 239 RKLSSALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWS 298
R +SSA SAA+AA DHI DWVLGT G W +MG+ SDGSY +P G+I+ FPVT +NGE+
Sbjct 237 RGVSSAASAANAAIDHIHDWVLGT-AGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYK 295
Query 299 IVQGRSIDEFSRKKMDATAAELSEEKD 325
IVQG SID FS+++++ T EL EE++
Sbjct 296 IVQGLSIDAFSQERINVTLNELLEEQN 322
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity
Of Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity
Of Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity
Of Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity
Of Malate Dehydrogenase From Thermus Flavus
Length=327
Score = 322 bits (825), Expect = 7e-108, Method: Compositional matrix adjust.
Identities = 173/323 (54%), Positives = 218/323 (67%), Gaps = 5/323 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K PVRV VTGAAGQIGY+L+ IA G MLG DQPVIL +L + +AL GV MEL D A
Sbjct 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
FPLL G+ AT D A A++VG PRK GMER+D++ N I+ Q AL + A
Sbjct 62 FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
+ KVLVV NPANTNALI + AP + +N T +TRLDHNRA Q++++ G V ++
Sbjct 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
+WGNHSST +PD+ HA V +P +LV D W FI TV QRGAAII+AR S
Sbjct 182 TVWGNHSSTMFPDLFHAEVDG----RPALELV-DMEWYEKVFIPTVAQRGAAIIQARGAS 236
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGSYNVPAGLIYSFPVTCKNGEWSIVQG 302
SA SAA+AA +HIRDW LGTPEG WVSM V S G Y +P G++YSFPVT K+G + +V+G
Sbjct 237 SAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEG 296
Query 303 RSIDEFSRKKMDATAAELSEEKD 325
I+EF+RK+M+ TA EL +E +
Sbjct 297 LEINEFARKRMEITAQELLDEME 319
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length=385
Score = 239 bits (609), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 136/324 (42%), Positives = 183/324 (56%), Gaps = 6/324 (2%)
Query 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAEALNGVKMELVDAA 62
K + V V+GAAG I L+ +A G + GPDQP+ L +L + AL GV MEL D+
Sbjct 40 KKIINVAVSGAAGMISNHLLFKLASGEVFGPDQPISLKLLGSERSFAALEGVAMELEDSL 99
Query 63 FPLLKGVVATTDVAEACAGVSVAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEQHAA 122
+PLL+ V D E A+++G PR GMER D++ N I+ Q AL A+
Sbjct 100 YPLLRQVSIGIDPYEIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVAS 159
Query 123 PNCKVLVVANPANTNALILKEFAPSIPAKNITCLTRLDHNRALGQISERLGVQVSDVKNA 182
PN KV+VV NP NTNALI + AP+IP KN LTRLD NRA Q++ + GV V N
Sbjct 160 PNVKVMVVGNPCNTNALICLKNAPNIPPKNFHALTRLDENRAKCQLALKAGVFYDKVSNV 219
Query 183 IIWGNHSSTQYPDVNHATVKTSAGEKPVRQLVADDAWLNGEFITTVQQRGAAIIKARKLS 242
IWGNHS+TQ PD +A + PV +++ D WL EF VQ RG +IK S
Sbjct 220 TIWGNHSTTQVPDFLNAKIHGI----PVTEVIRDRKWLEDEFTNMVQTRGGVLIKKWGRS 275
Query 243 SALSAASAACDHIRDWVLGTPEGTWVSMGVYSDGS-YNVPAGLIYSFPVTCK-NGEWSIV 300
SA S A + D IR V TPEG W S GVY++G+ Y + +++S P K +G++ V
Sbjct 276 SAASTAVSIVDAIRSLVTPTPEGDWFSTGVYTNGNPYGIAEDIVFSMPCRSKGDGDYEFV 335
Query 301 QGRSIDEFSRKKMDATAAELSEEK 324
+ D++ KK+ + EL EK