You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on Nov 9, 2023. It is now read-only.
I am trying to run an alignment with ClustalW, but I keep receiving this error...
Traceback (most recent call last):
File "/macqiime/anaconda/bin/align_seqs.py", line 211, in
main()
File "/macqiime/anaconda/bin/align_seqs.py", line 208, in main
log_path=log_path)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/align_seqs.py", line 123, in call
log_path=log_path, *args, **kwargs)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/util.py", line 259, in call
result = self.getResult(*args, **kwargs)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/align_seqs.py", line 117, in getResult
result = module.align_unaligned_seqs(seqs, params=params)
File "/macqiime/anaconda/lib/python2.7/site-packages/bfillings/clustalw.py", line 584, in align_unaligned_seqs
app = Clustalw(InputHandler='_input_as_multiline_string',params=params)
File "/macqiime/anaconda/lib/python2.7/site-packages/burrito/util.py", line 201, in init
self._error_on_missing_application(params)
File "/macqiime/anaconda/lib/python2.7/site-packages/burrito/util.py", line 468, in _error_on_missing_application
"Is it in your path?" % command)
burrito.util.ApplicationNotFoundError: Cannot find clustalw. Is it installed? Is it in your path?
This is my first time using Qiime, so I unsure of what I should to doing to resolve this error. Can anyone help with this?
The text was updated successfully, but these errors were encountered:
Sign up for freeto subscribe to this conversation on GitHub.
Already have an account?
Sign in.
I am trying to run an alignment with ClustalW, but I keep receiving this error...
Traceback (most recent call last):
File "/macqiime/anaconda/bin/align_seqs.py", line 211, in
main()
File "/macqiime/anaconda/bin/align_seqs.py", line 208, in main
log_path=log_path)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/align_seqs.py", line 123, in call
log_path=log_path, *args, **kwargs)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/util.py", line 259, in call
result = self.getResult(*args, **kwargs)
File "/macqiime/anaconda/lib/python2.7/site-packages/qiime/align_seqs.py", line 117, in getResult
result = module.align_unaligned_seqs(seqs, params=params)
File "/macqiime/anaconda/lib/python2.7/site-packages/bfillings/clustalw.py", line 584, in align_unaligned_seqs
app = Clustalw(InputHandler='_input_as_multiline_string',params=params)
File "/macqiime/anaconda/lib/python2.7/site-packages/burrito/util.py", line 201, in init
self._error_on_missing_application(params)
File "/macqiime/anaconda/lib/python2.7/site-packages/burrito/util.py", line 468, in _error_on_missing_application
"Is it in your path?" % command)
burrito.util.ApplicationNotFoundError: Cannot find clustalw. Is it installed? Is it in your path?
This is my first time using Qiime, so I unsure of what I should to doing to resolve this error. Can anyone help with this?
The text was updated successfully, but these errors were encountered: