Using SME with Matlab

[nkapadia27]

I'm having issues using the Matlab code on a single-channel file. Whenever I try running the program I get the error:

"To RESHAPE the number of elements must not change.

Error in Main_SME_method_SML (line 62)
edgeflag=reshape(idx,[size(Img,1) size(Img,2)]);

Error in SME_demo_single_channel (line 64)
[zprojf1,qzr2,classmap,idmaxini,cost,WW,C1,C2,C3]=Main_SME_method_SML(Img1,nametex2);"

Also, initally I got the error:
"Undefined function or variable 'find_sigma'.

Error in Main_SME_method_SML (line 9)
sigma=find_sigma(Img)

Error in SME_demo_single_channel (line 64)
[zprojf1,qzr2,classmap,idmaxini,cost,WW,C1,C2,C3]=Main_SME_method_SML(Img1,nametex2);"

But I fixed this one by changing line 9 from find_sigma to find_sigma_SML.

I can run the FIJI plugin just fine with same image stack.

[Shihav]

Corrected. And tested on Matlab 2010, Matlab 2013, Matlab 2017b