forked from therneau/survival
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathNAMESPACE
228 lines (226 loc) · 6.76 KB
/
NAMESPACE
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
useDynLib(survival, .registration = TRUE)
importFrom(splines, spline.des, ns)
importFrom(Matrix, expm)
importFrom(stats, anova, approx, as.formula, coef, coefficients,
contr.treatment, cor, density, delete.response, extractAIC, formula,
family, fitted, lm, logLik, makepredictcall, median, model.extract,
model.frame, model.matrix, model.offset, model.response,
model.weights, na.fail, na.pass, napredict, naprint, naresid, nobs,
pchisq, pnorm, printCoefmat, predict, qnorm, quantile, qgamma,
reformulate, setNames, terms.formula,
resid, residuals, rnorm, runif, stat.anova, terms, weights, var, vcov,
.checkMFClasses, .getXlevels, update, update.formula)
importFrom(graphics, arrows, axis, barplot, box, clip, matlines, matplot,
hist, frame, identify, image, par, plot, points, lines,
segments, strheight, strwidth, text)
importFrom(Matrix, expm)
importFrom(methods, as)
importFrom(utils, getS3method, type.convert, methods, head, tail)
export(Surv, Surv2, Surv2data, aeqSurv, aareg, agreg.fit,
agexact.fit, attrassign,
basehaz, cch, clogit, cipoisson, cluster, concordance, concordancefit,
coxph, cox.zph, coxph.control, coxph.detail, coxph.fit,
coxph.wtest, finegray, format.Surv,
frailty, frailty.gamma,
frailty.gaussian, frailty.t, is.Surv,
is.na.Surv, is.ratetable,
labels.survreg, match.ratetable, neardate,
psurvreg, qsurvreg, dsurvreg,
pspline, pyears, ratetableDate, ratetable,
ridge, rsurvreg, statefig, strata,
survSplit, survcheck, survdiff, survexp, survfit,
survfit0, survfit.formula,
coxsurv.fit, survfitKM, survfitCI,
survobrien,
survpenal.fit,
survreg, survreg.control, survreg.fit,
survreg.distributions, survregDtest, tcut,
tmerge, untangle.specials, yates, yates_setup,
survConcordance, survConcordance.fit, survfitcoxph.fit)
S3method('[', aareg)
S3method('[', Surv)
S3method('[', Surv2)
S3method('[', cox.zph)
S3method('[', coxph.penalty)
S3method('[', ratetable)
S3method('[', survfit)
S3method('[', survfitms)
S3method('[', tcut)
S3method(Math, Surv)
S3method(Math, Surv2)
S3method(Math, ratetable)
S3method(Ops, Surv)
S3method(Ops, Surv2)
S3method(Ops, ratetable)
S3method(Summary, Surv)
S3method(Summary, Surv2)
S3method(anyDuplicated, Surv)
S3method(anyDuplicated, Surv2)
S3method(anova, coxph)
S3method(anova, coxphlist)
S3method(anova, survreg)
S3method(anova, survreglist)
S3method(as.character, Surv)
S3method(as.character, Surv2)
S3method(as.data.frame, Surv)
S3method(as.data.frame, Surv2)
S3method(as.integer, Surv)
S3method(as.integer, Surv2)
S3method(as.logical, Surv)
S3method(as.logical, Surv2)
S3method(as.matrix, ratetable)
S3method(as.matrix, Surv)
S3method(as.matrix, Surv2)
S3method(as.numeric, Surv)
S3method(as.numeric, Surv2)
S3method(attrassign, default)
S3method(attrassign, lm)
S3method(barplot, Surv)
S3method(c, Surv)
S3method(c, Surv2)
S3method(coef, concordance)
S3method(coef, coxphms)
S3method(concordance, formula)
S3method(concordance, lm)
S3method(concordance, coxph)
S3method(concordance, survreg)
S3method(density, Surv)
S3method(dim, survfit)
S3method(duplicated, Surv)
S3method(duplicated, Surv2)
S3method(extractAIC,coxph.penal)
S3method(fitted, coxph)
S3method(fitted, survreg)
S3method(format, Surv)
S3method(format, Surv2)
S3method(head, Surv)
S3method(hist, Surv)
S3method(hist, Surv2)
S3method(identify, Surv)
S3method(identify, Surv2)
S3method(image, Surv)
S3method(image, Surv2)
S3method(is.na, Surv)
S3method(is.na, Surv2)
S3method(is.na, coxph.penalty)
S3method(is.na, ratetable)
S3method(labels, survreg)
S3method(levels, Surv)
S3method(levels, tcut)
S3method(lines, aareg)
S3method(lines, Surv)
S3method(lines, Surv2)
S3method(lines, survexp)
S3method(lines, survfit)
S3method(logLik, coxph)
S3method(logLik, coxph.null)
S3method(logLik, survreg)
S3method(makepredictcall, pspline)
S3method(median, Surv)
S3method(model.frame, coxph)
S3method(model.frame, survreg)
S3method(model.matrix, coxph)
S3method(model.matrix, survreg)
S3method(nobs, coxph)
S3method(nobs, survreg)
S3method(pairs, Surv)
S3method(pairs, Surv2)
S3method(plot, aareg)
S3method(plot, cox.zph)
S3method(plot, Surv)
S3method(plot, survfit)
S3method(points, Surv)
S3method(points, Surv2)
S3method(points, survfit)
S3method(predict, coxph)
S3method(predict, coxph.penal)
S3method(predict, pspline)
S3method(predict, survreg)
S3method(predict, survreg.penal)
S3method(print, Surv)
S3method(print, Surv2)
S3method(print, aareg)
S3method(print, cch)
S3method(print, clogit)
S3method(print, concordance)
S3method(print, cox.zph)
S3method(print, coxph)
S3method(print, coxph.null)
S3method(print, coxph.penal)
S3method(print, pyears)
S3method(print, ratetable)
S3method(print, summary.cch)
S3method(print, summary.coxph)
S3method(print, summary.coxph.penal)
S3method(print, summary.survexp)
S3method(print, summary.survfit)
S3method(print, summary.survfitms)
S3method(print, summary.survreg)
S3method(print, survdiff)
S3method(print, survcheck)
S3method(print, survexp)
S3method(print, survfit)
S3method(print, survfitms)
S3method(print, survreg)
S3method(print, survreg.penal)
S3method(print, yates)
S3method(quantile, survfit)
S3method(quantile, survfitms)
S3method(ratetableDate, POSIXt)
S3method(ratetableDate, Date)
S3method(ratetableDate, date)
S3method(ratetableDate, chron)
S3method(ratetableDate, default)
S3method(rep, Surv)
S3method(rep, Surv2)
S3method(rep.int, Surv)
S3method(rep.int, Surv2)
S3method(rep_len, Surv)
S3method(rep_len, Surv2)
S3method(residuals, coxph)
S3method(residuals, coxph.null)
S3method(residuals, coxph.penal)
S3method(residuals, survreg)
S3method(residuals, survreg.penal)
S3method(rev, Surv)
S3method(rev, Surv2)
S3method(summary, aareg)
S3method(summary, cch)
S3method(summary, coxph)
S3method(summary, coxph.penal)
S3method(summary, ratetable)
S3method(summary, pyears)
S3method(summary, survexp)
S3method(summary, survfit)
S3method(summary, survfitms)
S3method(summary, survreg)
S3method(survfit, coxph)
S3method(survfit, coxphms)
S3method(survfit, formula)
S3method(survfit, matrix)
S3method(survfit, Surv)
S3method(t, Surv)
S3method(t, Surv2)
S3method(tail, Surv)
S3method(tail, Surv2)
S3method(text, Surv)
S3method(text, Surv2)
S3method(unique, Surv)
S3method(vcov, cch)
S3method(vcov, concordance)
S3method(vcov, coxph)
S3method(vcov, survreg)
S3method(weights, coxph)
S3method(weights, survreg)
S3method(yates_setup, default)
S3method(yates_setup, glm)
S3method(yates_setup, coxph)
S3method('[', ratetable2)
S3method(is.na,ratetable2)
# xtfrm.Surv was moved out of base into survival at one point
if(getRversion() >= "3.6.0")
S3method(xtfrm, Surv)
# Make Surv objects have their logical length.
S3method(length, Surv)
S3method(names, Surv)
S3method("names<-", Surv)