build.gradle

apply plugin: 'java'
apply plugin: 'application'
apply plugin: 'eclipse'

repositories {
    mavenCentral()
}

dependencies {
    compile('com.github.sharispe:slib-sml:0.9.1')
    compile('com.github.samtools:htsjdk:2.1.0')
    compile('org.semanticweb.elk:elk-owlapi:0.4.3')
    compile('net.sourceforge.owlapi:owlapi-api:4.1.4')
    compile('net.sourceforge.owlapi:owlapi-apibinding:4.1.4')
    compile('net.sourceforge.owlapi:owlapi-impl:4.1.4')
    compile('net.sourceforge.owlapi:owlapi-parsers:4.1.4')
    compile('nz.ac.waikato.cms.weka:weka-stable:3.6.13')
    compile('org.codehaus.gpars:gpars:1.2.0')
    compile('com.beust:jcommander:1.48')
	compile group: 'org.jgrapht', name: 'jgrapht-core', version: '1.1.0'
    compile group: 'org.json', name: 'json', version: '20170516'
    testCompile('junit:junit:4.12')
}

sourceCompatibility = 1.8
version = '2.1'
jar {
    manifest {
        attributes 'Implementation-Title': 'phenomenet-vp',
                   'Implementation-Version': version
    }
}

run {
    if (project.hasProperty("appArgs")) {
        args Eval.me(appArgs)
    }
}

mainClassName = "sa.edu.kaust.Main"