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Switch to using the Snakemake builtin slurm executor rather than relying on profiles #475

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holtgrewe opened this issue Dec 2, 2023 · 0 comments
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@holtgrewe
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Is your feature request related to a problem? Please describe.
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]

Describe the solution you'd like
The Snakemake Slurm profile is not 100% reliable. Recent versions of Snakemake have a builtin executor that is reliable.

Describe alternatives you've considered
Switch to using this builtin executor. We might have to properly use resources with mem_gb consistently.

Additional context

@tedil tedil self-assigned this Jun 3, 2024
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