From 75b20591a8d8e83575535aace2f7210fe6eff79f Mon Sep 17 00:00:00 2001 From: Yasset Perez-Riverol Date: Fri, 18 Oct 2024 15:47:08 +0100 Subject: [PATCH] update template 3.0.2 --- modules/local/pmultiqc/main.nf | 2 -- subworkflows/local/dda_id.nf | 1 - subworkflows/local/id.nf | 1 - 3 files changed, 4 deletions(-) diff --git a/modules/local/pmultiqc/main.nf b/modules/local/pmultiqc/main.nf index a689c17b0..8636ddd9f 100644 --- a/modules/local/pmultiqc/main.nf +++ b/modules/local/pmultiqc/main.nf @@ -31,10 +31,8 @@ process PMULTIQC { # leaving here to ease debugging ls -lcth * - echo ">>>>>>>>> Experimental Design <<<<<<<<<" cat results/*openms_design.tsv - echo ">>>>>>>>> Running Multiqc <<<<<<<<<" multiqc \\ -f \\ --config ./results/multiqc_config.yml \\ diff --git a/subworkflows/local/dda_id.nf b/subworkflows/local/dda_id.nf index 397a56a6e..fe94e5f44 100644 --- a/subworkflows/local/dda_id.nf +++ b/subworkflows/local/dda_id.nf @@ -1,7 +1,6 @@ // // MODULE: Local to the pipeline // -include { DECOYDATABASE } from '../../modules/local/openms/decoydatabase/main' include { CONSENSUSID } from '../../modules/local/openms/consensusid/main' include { EXTRACTPSMFEATURES } from '../../modules/local/openms/extractpsmfeatures/main' include { PERCOLATOR } from '../../modules/local/openms/thirdparty/percolator/main' diff --git a/subworkflows/local/id.nf b/subworkflows/local/id.nf index b851ab818..d84075d0a 100644 --- a/subworkflows/local/id.nf +++ b/subworkflows/local/id.nf @@ -1,7 +1,6 @@ // // MODULE: Local to the pipeline // -include { DECOYDATABASE } from '../../modules/local/openms/decoydatabase/main' include { CONSENSUSID } from '../../modules/local/openms/consensusid/main' //