From 456ab0507d89a300d42b023fa902e0ff06455e1f Mon Sep 17 00:00:00 2001
From: Jermiah <jermiahjoseph98@gmail.com>
Date: Tue, 6 Feb 2024 01:03:27 +0000
Subject: [PATCH] Update package version and Docker tag

---
 DESCRIPTION                   |  2 +-
 build/annotationGx.Dockerfile | 13 ++++++++++++-
 build/buildimage.sh           |  4 +++-
 3 files changed, 16 insertions(+), 3 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 76766ce..5152e69 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: AnnotationGx
 Title: AnnotationGx: A package for building, updating and querying an
     annotation database for pharmaco-genomic data
-Version: 0.0.5.9002
+Version: 0.0.5.9100
 Authors@R: c(
     person("Christopher", "Eeles", role = c("aut"),
         email = "christopher.eeles@uhnresearch.ca"),
diff --git a/build/annotationGx.Dockerfile b/build/annotationGx.Dockerfile
index b4f3730..15d5211 100644
--- a/build/annotationGx.Dockerfile
+++ b/build/annotationGx.Dockerfile
@@ -34,10 +34,21 @@ RUN apt-get update && apt-get install -y \
 # RUN R -e "BiocManager::install('data.table', update = FALSE, ask = FALSE)"
 
 RUN install2.r --error --deps TRUE pak
+# add "https://r.acidgenomics.com", BiocManager::repositories() to the list of repositories
+
+RUN R -e "install.packages( \
+        pkgs = 'Cellosaurus',\
+        repos = c(\
+            'https://r.acidgenomics.com',\
+            BiocManager::repositories()\
+        ),\
+        dependencies = TRUE\
+    )"
 
-RUN R -e "pak::pkg_install('bhklab/AnnotationGx@main', ask = F)"
 
+RUN R -e "pak::pkg_install('bhklab/AnnotationGx@main', ask = F)"
 
+RUN R -e "pak::pak_cleanup(force=TRUE)"
 RUN rm -rf /tmp/*
 
 CMD ["R"]
\ No newline at end of file
diff --git a/build/buildimage.sh b/build/buildimage.sh
index f02d1b0..7e7e4b3 100755
--- a/build/buildimage.sh
+++ b/build/buildimage.sh
@@ -2,7 +2,9 @@
 
 export DOCKER_REPO="jjjermiah"
 export DOCKER_IMAGE_NAME="annotationgx-r"
-export DOCKER_TAG="0.1"
+export DOCKER_TAG="0.1.1"
 
 docker build -t $DOCKER_REPO/$DOCKER_IMAGE_NAME:$DOCKER_TAG -f build/annotationGx.Dockerfile .
 
+# then push to dockerhub
+docker push $DOCKER_REPO/$DOCKER_IMAGE_NAME:$DOCKER_TAG