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This happens in about 5% of cases, looping away and wasting compute with no error. See ablab/spades#152
A solution is to split the read correction and assembler, and skip the read correction if it fails to compete after some reasonable amount of time. spades-hammer can be run alone, then spades with the --only-assembler option
The text was updated successfully, but these errors were encountered:
This happens in about 5% of cases, looping away and wasting compute with no error. See ablab/spades#152
A solution is to split the read correction and assembler, and skip the read correction if it fails to compete after some reasonable amount of time.
spades-hammer
can be run alone, then spades with the--only-assembler
optionThe text was updated successfully, but these errors were encountered: