diff --git a/docs/params.md b/docs/params.md
index b3529b8..a3a8bdb 100644
--- a/docs/params.md
+++ b/docs/params.md
@@ -73,7 +73,7 @@ Parameters for the lineage subworkflow
| `run_poppunk_qc` | Whether to run the QC step for PopPunk | `boolean` | |
| `enable_subsetting` | Enable subsetting workflow based on genome similarity | `boolean` | |
| `core_similarity` | Similarity threshold for core genomes | `number` | 99.9 |
-| `accessory_similarity` | Similarity threshold for accessory genes | `number` | 99 |
+| `accessory_similarity` | Similarity threshold for accessory genes | `number` | 99.0 |
## Gene Order
@@ -141,9 +141,9 @@ Set the top limit for requested resources for any single job.
| Parameter | Description | Type | Default |
|-----------|-----------|-----------|-----------|
-| `max_cpus` | Maximum number of CPUs that can be requested for any single job. Help
Use to set an upper-limit for the CPU requirement for each process. Should be an integer e.g. `--max_cpus 1` | `integer` | 16 |
-| `max_memory` | Maximum amount of memory that can be requested for any single job. Help
Use to set an upper-limit for the memory requirement for each process. Should be a string in the format integer-unit e.g. `--max_memory '8.GB'` | `string` | 128.GB |
-| `max_time` | Maximum amount of time that can be requested for any single job. Help
Use to set an upper-limit for the time requirement for each process. Should be a string in the format integer-unit e.g. `--max_time '2.h'` | `string` | 240.h |
+| `max_cpus` | Maximum number of CPUs that can be requested for any single job. Help
Use to set an upper-limit for the CPU requirement for each process. Should be an integer e.g. `--max_cpus 1` | `integer` | 72 |
+| `max_memory` | Maximum amount of memory that can be requested for any single job. Help
Use to set an upper-limit for the memory requirement for each process. Should be a string in the format integer-unit e.g. `--max_memory '8.GB'` | `string` | 125.GB |
+| `max_time` | Maximum amount of time that can be requested for any single job. Help
Use to set an upper-limit for the time requirement for each process. Should be a string in the format integer-unit e.g. `--max_time '2.h'` | `string` | 168.h |
## Generic options
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 6e3a975..41177ce 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -226,7 +226,7 @@
},
"accessory_similarity": {
"type": "number",
- "default": 99,
+ "default": 99.0,
"fa_icon": "far fa-clone",
"description": "Similarity threshold for accessory genes"
}
@@ -440,7 +440,7 @@
"max_cpus": {
"type": "integer",
"description": "Maximum number of CPUs that can be requested for any single job.",
- "default": 16,
+ "default": 72,
"fa_icon": "fas fa-microchip",
"hidden": true,
"help_text": "Use to set an upper-limit for the CPU requirement for each process. Should be an integer e.g. `--max_cpus 1`"
@@ -448,7 +448,7 @@
"max_memory": {
"type": "string",
"description": "Maximum amount of memory that can be requested for any single job.",
- "default": "128.GB",
+ "default": "125.GB",
"fa_icon": "fas fa-memory",
"pattern": "^\\d+(\\.\\d+)?\\.?\\s*(K|M|G|T)?B$",
"hidden": true,
@@ -457,7 +457,7 @@
"max_time": {
"type": "string",
"description": "Maximum amount of time that can be requested for any single job.",
- "default": "240.h",
+ "default": "168.h",
"fa_icon": "far fa-clock",
"pattern": "^(\\d+\\.?\\s*(s|m|h|day)\\s*)+$",
"hidden": true,