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[PyMOL] Verbose mode #87

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ayushkarnawat opened this issue Mar 9, 2020 · 1 comment
Open

[PyMOL] Verbose mode #87

ayushkarnawat opened this issue Mar 9, 2020 · 1 comment
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enhancement Improvement to existing feature or code help wanted Extra attention is needed

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@ayushkarnawat
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When mutating residues for their tertiary structure using PyMOL's Mutagenesis wizard, it outputs (see example below) the residue selected and which rotamer was picked for the side chain (R-group). This gets annoying as there is no way to disable (suppress) them.

Selected!
 Mutagenesis: 1 rotamers loaded.
 Mutagenesis: 2 rotamers loaded.
 Rotamer 1/2, strain=21.70
Selected!
 Mutagenesis: 3 rotamers loaded.
 Mutagenesis: 10 rotamers loaded.
 Rotamer 7/10, strain=19.60
Selected!
 Mutagenesis: 10 rotamers loaded.
 Mutagenesis: 1 rotamers loaded.
 Rotamer 1/1, strain=53.26
Selected!
 Mutagenesis: 3 rotamers loaded.
 Mutagenesis: 4 rotamers loaded.
 Rotamer 2/4, strain=56.67
 Rotamer 2/4, strain=56.67
@ayushkarnawat ayushkarnawat added the enhancement Improvement to existing feature or code label Mar 9, 2020
@ayushkarnawat ayushkarnawat self-assigned this Mar 9, 2020
@ayushkarnawat
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Even using the PyMOL CLI options (in particular -Q), it does not seem to suppress the text output.

Looking more deeply into the Mutagenesis wizard, the text outputs are directly printed to standard output rather than being logged.

@ayushkarnawat ayushkarnawat added the help wanted Extra attention is needed label Mar 9, 2020
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Labels
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