jupyter.md

• General
  • Browser:
  • Alias
  • Close ports
• Hints
  • Display several images
  • Multiple coursors

General

make sure you install Jupyter notebook in both remote (your server) and local (your personal workstation) computer MAKE SURE U USE /bin/bash and correct version of python if you aim to run msprime

jupyter notebook --no-browser --port=8889
# you should leave it open

In your local computer:

ssh -N -f -L localhost:8888:localhost:8889 username@your_remote_host_name
# make sure to change `username` to your real username in remote host
# change `your_remote_host_name` to your address of your working station

Browser:

localhost:8888

Alias

Hint: to simplify connection process make alias in your bashrc file for ssh, such as

alias servernotebook='ssh -N -f -L localhost:8888:localhost:8889 username@your_remote_host_name'

Close port that is in use

where 8888 is port #

sudo kill $(sudo lsof -t -i:8888)  

Hints

Display several images from a directory

from IPython.display import Image, HTML, display
from glob import glob
imagesList=''.join( ["<img style='width: 800px; margin: 0px; float: left; border: 1px solid black;' src='%s' />" % str(s) 
                 for s in sorted(glob('bcfstats*.png')) ])
display(HTML(imagesList))

Multiple coursors

cntr + click