-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathstmv_xtb.inp
96 lines (96 loc) · 1.79 KB
/
stmv_xtb.inp
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
&FORCE_EVAL
METHOD Quickstep
&DFT
&QS
LS_SCF
METHOD xTB
&xTB
DO_EWALD T
&END xTB
&DISTRIBUTION
BASIC_OPTIMIZATION .FALSE.
BASIC_SPATIAL_OPTIMIZATION .TRUE.
&END
&END QS
&PRINT
&MULLIKEN ON
FILENAME mulliken
&END
&END
&POISSON
&EWALD
EWALD_TYPE SPME
ALPHA 0.35
O_SPLINE 5
&END EWALD
&END POISSON
&LS_SCF
EPS_SCF 1E-7
EPS_FILTER 1E-7
MAX_SCF 30
PURIFICATION_METHOD TRS4
MIXING_FRACTION 0.10
REPORT_ALL_SPARSITIES .FALSE.
MAX_ITER_LANCZOS 128
EXTRAPOLATION_ORDER 1
MATRIX_CLUSTER_TYPE MOLECULAR
&CURVY_STEPS
&END
S_PRECONDITIONER NONE
&END
&END DFT
&SUBSYS
&CELL
ABC 216.832 216.832 216.832
&END CELL
!
! coord_mol is directly derived from online available stmv.psf/stmv.pdb
! it declares each water molecule a molecule, whereas each atom of the virus is an atom as well.
!
&COORD
@INCLUDE 'coord_mol'
&END COORD
&TOPOLOGY
CONNECTIVITY USER
PARA_RES .FALSE.
&END TOPOLOGY
! &TOPOLOGY
! CONN_FILE ./stmv.psf
! CONNECTIVITY PSF
! COORD_FILE_NAME ./stmv.pdb
! COORDINATE PDB
! PARA_RES .FALSE.
! &END TOPOLOGY
&PRINT
&ATOMIC_COORDINATES OFF
&END
&MOLECULES OFF
&END
&END
&END SUBSYS
&END FORCE_EVAL
&GLOBAL
PROJECT STMV
RUN_TYPE GEO_OPT
PRINT_LEVEL MEDIUM
EXTENDED_FFT_LENGTHS
SAVE_MEM
# TRACE
# TRACE_MASTER
# TRACE_MAX 2000
&TIMINGS
THRESHOLD 0.0000001
TIME_MPI
&END
CALLGRAPH MASTER
&END GLOBAL
&MOTION
&GEO_OPT
&LBFGS
TRUST_RADIUS 0.05
&END
OPTIMIZER LBFGS
! use more iterations for added realism.
MAX_ITER 1
&END
&END