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PIN: pysam 0.16.0.1 pin not compatible with python 3 #292

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lizgehret opened this issue Sep 10, 2024 · 3 comments
Open

PIN: pysam 0.16.0.1 pin not compatible with python 3 #292

lizgehret opened this issue Sep 10, 2024 · 3 comments
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@lizgehret
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The pysam pin in rgi's conda recipe is not compatible with python 3. Current package build dependencies for pysam 0.16.0.1 are as follows:

{
"arch": "x86_64",
"build": "py27h405c952_3",
"build_number": 3,
"depends": [
"bzip2 >=1.0.8,<2.0a0",
"libcurl >=7.75.0,<8.0a0",
"libdeflate >=1.7,<1.8.0a0",
"python >=2.7,<2.8.0a0",
"python_abi 2.7.* *_cp27m",
"xz >=5.2.5,<5.3.0a0",
"zlib >=1.2.11,<1.3.0a0"
],
"license": "MIT",
"name": "pysam",
"platform": "osx",
"subdir": "osx-64",
"timestamp": 1616877896113,
"version": "0.16.0.1"
}

Is it possible to relax pysam to a min pin so that rgi can be used in conda environments containing python 3 (& associated packages)? This request is related to #283 - I am currently working with @VinzentRisch's lab on distributing a new collection of QIIME 2 plugins, one of which requires rgi. If that's possible, I'm happy to submit a PR!

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Issue is stale and will be closed in 7 days unless there is new activity

@github-actions github-actions bot added the stale label Nov 10, 2024
@lizgehret
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Adding another comment here so this issue doesn't get closed. Any help would be much appreciated 😁

@github-actions github-actions bot removed the stale label Nov 13, 2024
@indajuan
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Adding another comment here so this issue doesn't get closed. Any help would be much appreciated 😁

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