diff --git a/myco_raw.wdl b/myco_raw.wdl index da12f9b..0f936c1 100644 --- a/myco_raw.wdl +++ b/myco_raw.wdl @@ -286,7 +286,7 @@ workflow myco { # coerce optional types into required types Array[String] coerced_bam_strains=select_all(profile_bam.strain) Array[String] coerced_bam_resistances=select_all(profile_bam.resistance) - Array[String] coerced_bam_depths=select_all(profile_bam.median_depth) + Array[Int] coerced_bam_depths=select_all(profile_bam.median_depth_as_int) # workaround for "profile_bam.strain exists but profile_bam didn't run" bug if(!(length(coerced_bam_strains) == 0)) {