From be4aabcd5340aec16a69fbd13b460ac122c768d6 Mon Sep 17 00:00:00 2001
From: cmaceves <christineaceves22@gmail.com>
Date: Mon, 17 Jun 2024 14:29:37 -0700
Subject: [PATCH] update dockerfile for macos and update github workflow for
 config aux files

---
 .github/workflows/ccpp.yml |  3 +++
 Dockerfile                 | 10 +++++-----
 2 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ccpp.yml b/.github/workflows/ccpp.yml
index 6a9a07fe..b353ddf9 100644
--- a/.github/workflows/ccpp.yml
+++ b/.github/workflows/ccpp.yml
@@ -75,6 +75,9 @@ jobs:
     - name: install htslib
       run: |
         cd htslib-1.10.2/
+        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.sub
+        curl -O http://git.savannah.gnu.org/cgit/config.git/plain/config.guess
+        chmod +x config.guess config.sub
         autoheader
         autoconf
         ./configure
diff --git a/Dockerfile b/Dockerfile
index 78e300ec..057094a6 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -34,12 +34,12 @@ RUN cd root/ &&\
     make install
 # bwa
 RUN cd root/ &&\
-    wget https://github.com/lh3/bwa/archive/v0.7.17.tar.gz &&\
-    tar xvf v0.7.17.tar.gz &&\
-    cd bwa-0.7.17/ &&\
+    wget https://github.com/lh3/bwa/archive/v0.7.18.tar.gz &&\
+    tar xvf v0.7.18.tar.gz &&\
+    cd bwa-0.7.18/ &&\
     make &&\
     cd ../ &&\
-    rm v0.7.17.tar.gz
-ENV PATH /root/bwa-0.7.17:$PATH
+    rm v0.7.18.tar.gz
+ENV PATH /root/bwa-0.7.18:$PATH
 # Snakemake
 RUN pip3 install pandas snakemake