From 842c3aafb44d2922982c413579b2230dd03032e7 Mon Sep 17 00:00:00 2001
From: dylanpilz <dpilz@ucsd.edu>
Date: Thu, 14 Nov 2024 10:10:22 -0500
Subject: [PATCH] clean redundant error handling

---
 freyja/read_analysis_tools.py | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/freyja/read_analysis_tools.py b/freyja/read_analysis_tools.py
index 3b0201d..09c586d 100644
--- a/freyja/read_analysis_tools.py
+++ b/freyja/read_analysis_tools.py
@@ -443,11 +443,10 @@ def process_covariants(input_bam, min_site, max_site, ref_fasta, gff_file,
             # Update coverage ranges
             if coverage_start is None or start < coverage_start:
                 coverage_start = start
-            try:
-                if coverage_end is None or end > coverage_end:
-                    coverage_end = end
-            except TypeError as e:
-                print(e)
+
+            if coverage_end is None or end > coverage_end:
+                coverage_end = end
+
             cigar = re.findall(r'(\d+)([A-Z]{1})', x.cigarstring)
             if 'I' in x.cigarstring:
                 i = 0