From 14255e72e1ed6e14868d5805896a8b2ed8131be3 Mon Sep 17 00:00:00 2001 From: joshuailevy Date: Wed, 25 Dec 2024 01:33:48 +0000 Subject: [PATCH] updating barcodes and metadata --- freyja/data/last_barcode_update.txt | 2 +- freyja/data/lineage_mutations.json | 8 ++++---- freyja/data/usher_barcodes.feather | Bin 4009842 -> 4009834 bytes 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/freyja/data/last_barcode_update.txt b/freyja/data/last_barcode_update.txt index f521b81..3c66fe2 100644 --- a/freyja/data/last_barcode_update.txt +++ b/freyja/data/last_barcode_update.txt @@ -1 +1 @@ -12_22_2024-01-40 +12_25_2024-01-33 diff --git a/freyja/data/lineage_mutations.json b/freyja/data/lineage_mutations.json index 17dcd39..08186d5 100644 --- a/freyja/data/lineage_mutations.json +++ b/freyja/data/lineage_mutations.json @@ -301120,7 +301120,7 @@ "C28958A", "A29510C" ], - "XEK.1": [ + "XEK.4": [ "C241T", "C593T", "T670G", @@ -301130,7 +301130,6 @@ "G3431T", "C3505T", "T3565C", - "G3774A", "G4184A", "C4321T", "T5701C", @@ -301216,6 +301215,7 @@ "C23423T", "C23525T", "T23599G", + "C23601T", "C23604G", "C23854A", "G23948T", @@ -301253,7 +301253,7 @@ "C28958A", "A29510C" ], - "XEK.4": [ + "XEK.1": [ "C241T", "C593T", "T670G", @@ -301263,6 +301263,7 @@ "G3431T", "C3505T", "T3565C", + "G3774A", "G4184A", "C4321T", "T5701C", @@ -301348,7 +301349,6 @@ "C23423T", "C23525T", "T23599G", - "C23601T", "C23604G", "C23854A", "G23948T", diff --git a/freyja/data/usher_barcodes.feather b/freyja/data/usher_barcodes.feather index 7415fb945313911abfc1b7bf17108c882de2f9f1..b6ba222713613ef21ecbe53a98f6745c887796ba 100644 GIT binary patch delta 53673 zcmZ9V3B00J-N(;p7UqUKW0|OFm>Z@RE+v)K)yilyvPEpAvP8?GvY?uhR;k_^Y`wNp zSuwY{Gi27Fm64j^PH9G3hLuKUimmUn{J+5O%;$68-tYPTmvhc@o(H)1&Uo)__pSL; z@Ks;8X5CinwqEy;b=$0a=(>lkORU>=-NV;yw{H7&JFMGr-A?P08+XpFUDIBF%-Wq_ zyXM04FIu~E@U_e4i`MS?+Y4%2T>NKvchdep<;!h!`5yJ~s`=ty)x-GYM7?p%tyqD+ z7Xahyf71f+bxh!1^+n_Fn@{~+eatoInBl++fG@EE&HJ 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