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unmapped sam to pair end reads #1

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bioinfonext opened this issue Dec 10, 2019 · 1 comment

bioinfonext commented Dec 10, 2019

Hi,

How I can extract proper pair end read from these sam files

samtools view -S -f4 sample.sam > sample.unmapped.sam

Owner

alvaralmstedt commented Dec 10, 2019

You just want to convert the sam output to fastq files?
You could try THIS

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