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CHANGELOG.txt
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v<1.14.3>, 2017-11-2
GitHub stats for 2017/09/23 - 2017/11/02
These lists are automatically generated, and may be incomplete or contain duplicates.
We closed a total of 31 issues, 8 pull requests and 23 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (8):
* :ghpull:`997`: b'edit README.md for example datasets'
* :ghpull:`999`: b'Raise ImportError on missing palettable and PEP8'
* :ghpull:`983`: b'Fix inconsistent use of tabs and spaces in indentation.'
* :ghpull:`995`: b'Foliumfix'
* :ghpull:`993`: b'B991'
* :ghpull:`988`: b'Resolve issue of "False" "id_order_set" when building contiguity weights from shapefile even if `idVariable` is given in initialization'
* :ghpull:`982`: b'update release instructions for new test.pypi'
* :ghpull:`979`: b'Rel 1.14.2'
Issues (23):
* :ghissue:`997`: b'edit README.md for example datasets'
* :ghissue:`970`: b'Odd pysal.Moran() randomisation VI'
* :ghissue:`999`: b'Raise ImportError on missing palettable and PEP8'
* :ghissue:`998`: b'Should missing palettable be a warning or error? '
* :ghissue:`981`: b'mixed indentation in `iwls`'
* :ghissue:`987`: b"discrepancy in EB Local Moran's I with PySAL vs. GeoDa results"
* :ghissue:`992`: b'Scipy 1.0.0 Compat issues'
* :ghissue:`991`: b'Chisqprob is deprecated'
* :ghissue:`983`: b'Fix inconsistent use of tabs and spaces in indentation.'
* :ghissue:`996`: b'edit README for example datasets'
* :ghissue:`989`: b"resolve discrepancy of estimating Moran's I corrected for rates between GeoDa and pysal"
* :ghissue:`995`: b'Foliumfix'
* :ghissue:`994`: b'folium breakage'
* :ghissue:`971`: b'base_lisa_cluster function call does not pass p_thresh'
* :ghissue:`993`: b'B991'
* :ghissue:`984`: b'Level dev & master, incorporate 983'
* :ghissue:`990`: b'problem with open shp file'
* :ghissue:`988`: b'Resolve issue of "False" "id_order_set" when building contiguity weights from shapefile even if `idVariable` is given in initialization'
* :ghissue:`980`: b'release documentation test pypi is out of date'
* :ghissue:`982`: b'update release instructions for new test.pypi'
* :ghissue:`978`: b'Coordinate releases on pypi and github'
* :ghissue:`976`: b'bump pysal/pysal/version.py please'
* :ghissue:`979`: b'Rel 1.14.2'
v<1.14.2>, 2017-09-23
This is a bug fix release for the 1.14 Python 2.x. series of PySAL.
We closed a total of 8 issues, 3 pull requests and 5 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (3):
* :ghpull:`975`: Correction of Geary's C under randomization
* :ghpull:`972`: Bug Fix for #970
* :ghpull:`973`: Passing p_thres in plot_lisa_cluster. This fixes #971
Issues (5):
* :ghissue:`974`: Re: #979
* :ghissue:`975`: Correction of Geary's C under randomization
* :ghissue:`972`: Bug Fix for #970
* :ghissue:`973`: Passing p_thres in plot_lisa_cluster. This fixes #971
* :ghissue:`968`: find_bin does not include top value
v<1.14.0>, 2017-07-13
This is the last version of PySAL that will officially support Python 2.x.
This version will also receive only bug fixes going forward. All new PySAL
functionality will be added using the new structure documented at pysal.org.
We closed a total of 114 issues, 36 pull requests and 78 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (36):
* :ghpull:`915`: Network dev
* :ghpull:`911`: coverage change
* :ghpull:`931`: Fix for negative values of ebi_v in assancao_rate smoother function
* :ghpull:`955`: Minor corrections to issue template
* :ghpull:`888`: Fix unusual interpreter path.
* :ghpull:`926`: DOC: fix a broken link (HTTP 404) in documentation
* :ghpull:`951`: Order enforce
* :ghpull:`953`: deprecating headbanging
* :ghpull:`952`: fix for #932 coordinates need to be (lon, lat) not (lat, lon)
* :ghpull:`946`: [WIP] add Distance bugfix
* :ghpull:`942`: fixed the bug in reading the new ArcGIS .swm file
* :ghpull:`947`: [WIP] fix bug #944
* :ghpull:`950`: Lag cat fix
* :ghpull:`928`: Fixed incorrect file path in fileio.rst
* :ghpull:`927`: DOC: fix formatting of a code block in the documentation
* :ghpull:`934`: Added String_Type values to unsupported file types
* :ghpull:`929`: DOC: make code snippet in documentation compatible to Python 3
* :ghpull:`924`: add pseudocode makefile
* :ghpull:`916`: Util.compute length
* :ghpull:`919`: Dijkstra mp
* :ghpull:`921`: Mapping: allow tips parameter even if col not passed
* :ghpull:`912`: adjust the formula for calculating local Moran's I in the docs
* :ghpull:`913`: 0. Fixed docstring that was causing latex error
* :ghpull:`910`: add new weights classes & methods to docs & tutorials
* :ghpull:`908`: Geographically weighted regresson
* :ghpull:`907`: Spint
* :ghpull:`905`: Spint - fix local param indexing
* :ghpull:`904`: Rc1.13.1
* :ghpull:`903`: Fix for numpy bump induced breakage
* :ghpull:`902`: Spreg fix
* :ghpull:`901`: Badge for docs
* :ghpull:`899`: fix inplace overwrite issue
* :ghpull:`897`: fix minor typo
* :ghpull:`887`: Dev version bump
* :ghpull:`885`: Fixing doc builds
* :ghpull:`883`: release 1.13.0
Issues (78):
* :ghissue:`892`: allow non-binary weights to propagate in w_subset
* :ghissue:`915`: Network dev
* :ghissue:`925`: Reorg
* :ghissue:`911`: coverage change
* :ghissue:`848`: Points contrib module
* :ghissue:`931`: Fix for negative values of ebi_v in assancao_rate smoother function
* :ghissue:`956`: Nose tests fail for python 3 in Windows
* :ghissue:`917`: Code not updated in docs
* :ghissue:`943`: mapclassify docs contain a long WARNING
* :ghissue:`948`: test_Headbanging_Median_Rate fails with Python 3.6
* :ghissue:`955`: Minor corrections to issue template
* :ghissue:`958`: Estimate panel models in spreg
* :ghissue:`949`: spreg request: Conley standard errors
* :ghissue:`888`: Fix unusual interpreter path.
* :ghissue:`926`: DOC: fix a broken link (HTTP 404) in documentation
* :ghissue:`951`: Order enforce
* :ghissue:`953`: deprecating headbanging
* :ghissue:`313`: Add handler for topojson
* :ghissue:`316`: Add support for geojson
* :ghissue:`721`: Ability to specify categories / ranges in spatial markov method
* :ghissue:`474`: Add contrib module to explore interface with geopandas
* :ghissue:`651`: Design Point Pattern API
* :ghissue:`648`: FileIO deprecation warning
* :ghissue:`891`: Strange weights when I apply w_subset
* :ghissue:`201`: Distance matrix builder
* :ghissue:`872`: `weights.util.higher_order` warns when using a subclassed `W`
* :ghissue:`923`: Arc_KDTree returned distances incorrect
* :ghissue:`952`: fix for #932 coordinates need to be (lon, lat) not (lat, lon)
* :ghissue:`945`: `DistanceBand` failing when `ids` passed
* :ghissue:`946`: [WIP] add Distance bugfix
* :ghissue:`939`: Compute spatial weight matrix from geopandas dataframe
* :ghissue:`937`: Can't read ESRI spatial weights matrix
* :ghissue:`942`: fixed the bug in reading the new ArcGIS .swm file
* :ghissue:`729`: Update contrib docs
* :ghissue:`947`: [WIP] fix bug #944
* :ghissue:`950`: Lag cat fix
* :ghissue:`944`: Higher Order Weights from Queen Contiguity Weights - Unsupported sparse argument
* :ghissue:`922`: Weights, ordering, and from_dataframe
* :ghissue:`940`: Add a Gitter chat badge to README.md
* :ghissue:`928`: Fixed incorrect file path in fileio.rst
* :ghissue:`906`: GSOC 2017
* :ghissue:`938`: I use “Markov(class_ids, classes=None)” ,classes (array) – (k, 1), define k=4, but the result display error.
* :ghissue:`927`: DOC: fix formatting of a code block in the documentation
* :ghissue:`935`: Creating Network instance from road shapefile fails; ValueError: list.remove(x): x not in list
* :ghissue:`932`: Opening PolyLineM Shapefile fails to return file type unsupported error
* :ghissue:`934`: Added String_Type values to unsupported file types
* :ghissue:`929`: DOC: make code snippet in documentation compatible to Python 3
* :ghissue:`924`: add pseudocode makefile
* :ghissue:`916`: Util.compute length
* :ghissue:`919`: Dijkstra mp
* :ghissue:`866`: Use install_requires to automatically install required packages if they are not present
* :ghissue:`921`: Mapping: allow tips parameter even if col not passed
* :ghissue:`914`: added wkt representation for chain/polygon
* :ghissue:`918`: Python 3.5, pysal FileIO import error
* :ghissue:`912`: adjust the formula for calculating local Moran's I in the docs
* :ghissue:`913`: 0. Fixed docstring that was causing latex error
* :ghissue:`910`: add new weights classes & methods to docs & tutorials
* :ghissue:`908`: Geographically weighted regresson
* :ghissue:`907`: Spint
* :ghissue:`905`: Spint - fix local param indexing
* :ghissue:`904`: Rc1.13.1
* :ghissue:`896`: test_Headbanging_Median_Rate fails
* :ghissue:`903`: Fix for numpy bump induced breakage
* :ghissue:`902`: Spreg fix
* :ghissue:`901`: Badge for docs
* :ghissue:`899`: fix inplace overwrite issue
* :ghissue:`610`: SpReg Deprecation Warning
* :ghissue:`895`: Weights for rasters or arrays with missing data
* :ghissue:`897`: fix minor typo
* :ghissue:`881`: Readthedocs failing to build due to missing ingmath module
* :ghissue:`893`: DistanceBand error (AttributeError: power not found)
* :ghissue:`890`: no neighbors on threshold_continuousW, after w_subset
* :ghissue:`887`: Dev version bump
* :ghissue:`886`: Dev
* :ghissue:`885`: Fixing doc builds
* :ghissue:`884`: Rel/1.13.1
* :ghissue:`883`: release 1.13.0
* :ghissue:`876`: changing shp.next() to next(shp)
v<1.13.0>, 2016-11-24
We closed a total of 38 issues, 7 pull requests and 31 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (7):
* :ghpull:`844`: Geotable plot
* :ghpull:`875`: Spint constant
* :ghpull:`874`: Use standard python facilites for warning
* :ghpull:`873`: updating release schedule
* :ghpull:`871`: Put requirements into setup.py so they are installed if missing
* :ghpull:`870`: Doc/release
* :ghpull:`869`: Dev
Issues (31):
* :ghissue:`844`: Geotable plot
* :ghissue:`877`: documentation links to numpy and scipy are broken
* :ghissue:`875`: Spint constant
* :ghissue:`874`: Use standard python facilites for warning
* :ghissue:`873`: updating release schedule
* :ghissue:`871`: Put requirements into setup.py so they are installed if missing
* :ghissue:`591`: check pysal version and report if a more recent stable version is available
* :ghissue:`410`: prototype LISA cluster map
* :ghissue:`333`: Add k functions
* :ghissue:`274`: Implement LISA in network module
* :ghissue:`746`: Network data structures
* :ghissue:`751`: A method to get a list of example-files by type
* :ghissue:`219`: inconsistent treatment of centroids in arc distance calculations in weights/user.py
* :ghissue:`173`: implement cross sectional and space-time scan statistics
* :ghissue:`170`: centralize all kernel based calculations
* :ghissue:`134`: Complete cg.locators
* :ghissue:`94`: Smoothing: add another module based on model-based smoothing
* :ghissue:`91`: Smoothing: Develop simulations for comparing different smoothers
* :ghissue:`90`: Overhaul Polygon class
* :ghissue:`89`: Optimize shapefile reader
* :ghissue:`88`: Optimize Clockwise test
* :ghissue:`86`: Spatial_Dynamics: LISA Time paths
* :ghissue:`85`: Spatial_Dynamics: modified knox statistic
* :ghissue:`84`: Spatial_Dynamics: Optimize Theta
* :ghissue:`652`: Use cKDtree for Arc_KDTree
* :ghissue:`697`: Update Release Management to Support Rolling Releases
* :ghissue:`761`: Object-oriented design for viz module
* :ghissue:`767`: ZeroDivisonError when calculating certain centroids
* :ghissue:`849`: dbf2df can not read dbf files within which there are Chinese characters
* :ghissue:`870`: Doc/release
* :ghissue:`869`: Dev
v<1.12.0>, 2016-09-21
We closed a total of 100 issues, 33 pull requests and 67 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (33):
* :ghpull:`864`: addressing issue #845 and adding tests
* :ghpull:`862`: Memory efficient Gini and tests
* :ghpull:`865`: fix space/tab inconsistency
* :ghpull:`861`: GSOC -SpInt
* :ghpull:`847`: spatial interaction weights
* :ghpull:`863`: B859
* :ghpull:`860`: Incoprate updates to db driver and unittests
* :ghpull:`858`: Dev mltest
* :ghpull:`857`: Fix TabErrors, replace tabs with spaces
* :ghpull:`856`: Make the output and build reproducible
* :ghpull:`851`: fixed typo in test_network.py
* :ghpull:`850`: [REBASE] Distance band speed ups
* :ghpull:`843`: update and clean aesthetic of Network_Usage.ipynb
* :ghpull:`842`: typo correction in network.py
* :ghpull:`841`: [REBASE & REDIRECT] Conditional Database Imports & Docos, #692
* :ghpull:`840`: minor bugfix to #816
* :ghpull:`839`: documentation cleanup on network.analysis.py
* :ghpull:`838`: network.util.py documentation cleanup
* :ghpull:`836`: re: network.py documentation cleanup
* :ghpull:`768`: Modified the way area of a ring is calculated to allow for more precision
* :ghpull:`829`: numba autojit _fisher_jenks_means if numba is available
* :ghpull:`832`: Handling a deprecation warning, and latex errors corrected.
* :ghpull:`834`: Travis testing matrix
* :ghpull:`831`: Refactoring Markov classes for efficiency
* :ghpull:`827`: ESDA Tabular Functions
* :ghpull:`823`: typo and format of docstring of user.py in weights module
* :ghpull:`821`: Pdio
* :ghpull:`817`: D/sur
* :ghpull:`818`: Documentation fix + some PEP8 standardization
* :ghpull:`811`: DistanceBand should correctly handle named weights
* :ghpull:`808`: Dev
* :ghpull:`807`: Updating contrib docs and bumping version for dev
* :ghpull:`797`: working moran plot func
Issues (67):
* :ghissue:`855`: Inefficient Gini Coefficient calculation?
* :ghissue:`864`: addressing issue #845 and adding tests
* :ghissue:`862`: Memory efficient Gini and tests
* :ghissue:`865`: fix space/tab inconsistency
* :ghissue:`861`: GSOC -SpInt
* :ghissue:`847`: spatial interaction weights
* :ghissue:`859`: Wrong there is one disconnected observation (no neighbors)
* :ghissue:`863`: B859
* :ghissue:`860`: Incoprate updates to db driver and unittests
* :ghissue:`858`: Dev mltest
* :ghissue:`857`: Fix TabErrors, replace tabs with spaces
* :ghissue:`854`: handle verication context for githubstats
* :ghissue:`856`: Make the output and build reproducible
* :ghissue:`851`: fixed typo in test_network.py
* :ghissue:`850`: [REBASE] Distance band speed ups
* :ghissue:`846`: DistanceBand speed ups
* :ghissue:`843`: update and clean aesthetic of Network_Usage.ipynb
* :ghissue:`842`: typo correction in network.py
* :ghissue:`692`: Conditional Database Import / Docos
* :ghissue:`841`: [REBASE & REDIRECT] Conditional Database Imports & Docos, #692
* :ghissue:`769`: Windows 7, 64 bit installation issue with visual C++ for python
* :ghissue:`816`: Exception TypeError in geoda_txt.py
* :ghissue:`840`: minor bugfix to #816
* :ghissue:`839`: documentation cleanup on network.analysis.py
* :ghissue:`397`: integrate optimized contiguity builder
* :ghissue:`531`: add user space function to generate numpy arrays
* :ghissue:`654`: meta update for 2-3 conversion
* :ghissue:`676`: Meta not importable from pysal
* :ghissue:`838`: network.util.py documentation cleanup
* :ghissue:`753`: Fix the network ring bug
* :ghissue:`836`: re: network.py documentation cleanup
* :ghissue:`768`: Modified the way area of a ring is calculated to allow for more precision
* :ghissue:`837`: re: network.allneighbordistances() diagonal fill
* :ghissue:`822`: two issues about function choropleth_map in viz module
* :ghissue:`835`: fix deprecation warnings noted in #822
* :ghissue:`829`: numba autojit _fisher_jenks_means if numba is available
* :ghissue:`832`: Handling a deprecation warning, and latex errors corrected.
* :ghissue:`834`: Travis testing matrix
* :ghissue:`825`: Headbanging Median Rate ignores edge correction
* :ghissue:`826`: Spatial Filtering grid definition
* :ghissue:`824`: Direct Age Standardization fails for empty regions
* :ghissue:`833`: PySAL+ optional testing matrix
* :ghissue:`830`: [REBASED] PySAL+ optional testing matrix
* :ghissue:`831`: Refactoring Markov classes for efficiency
* :ghissue:`827`: ESDA Tabular Functions
* :ghissue:`815`: rook case not working in ContiguityWeightsPolygons
* :ghissue:`828`: Fisher_Jenks pure python implementation is too slow
* :ghissue:`814`: Explore Classmethods for alternative constructors
* :ghissue:`795`: switch to scipy.linalg instead of numpy.linalg
* :ghissue:`799`: w_subset(weights:W, ids:np.ndarray) constructs faulty weights object
* :ghissue:`823`: typo and format of docstring of user.py in weights module
* :ghissue:`821`: Pdio
* :ghissue:`794`: spreg ML_lag doesn't always set W in __init__
* :ghissue:`754`: Update README
* :ghissue:`819`: add LIMAs
* :ghissue:`817`: D/sur
* :ghissue:`818`: Documentation fix + some PEP8 standardization
* :ghissue:`809`: Fixed documentation
* :ghissue:`813`: w.remap_ids(ids) never sets w.id_order_set
* :ghissue:`775`: Added a prototype for constructing weights from a list of shapely Polygons
* :ghissue:`810`: DistanceBand fails to accept custom ids
* :ghissue:`811`: DistanceBand should correctly handle named weights
* :ghissue:`780`: Doctests failing on travis
* :ghissue:`801`: ImportError: No module named scipy.spatial
* :ghissue:`808`: Dev
* :ghissue:`807`: Updating contrib docs and bumping version for dev
* :ghissue:`797`: working moran plot func
v<1.11.2>, 2016-05-18
We closed a total of 20 issues, 6 pull requests and 14 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (6):
* :ghpull:`805`: pre Rel1.11.2 and #840
* :ghpull:`802`: fixed issues with model handler failing to correctly discover models
* :ghpull:`798`: fix for css problem on rtd #790
* :ghpull:`793`: Getting weights doctests to pass
* :ghpull:`791`: Doc/rolling
* :ghpull:`792`: Local Moran was using the incorrect moments in z_sim and p_z_sim
Issues (14):
* :ghissue:`805`: pre Rel1.11.2 and #840
* :ghissue:`803`: check_contiguity error..
* :ghissue:`802`: fixed issues with model handler failing to correctly discover models
* :ghissue:`800`: `ps.threshold_continuousW_from_shapefile` returning inf along diagonal
* :ghissue:`771`: KDtree type mismatch in knnW
* :ghissue:`798`: fix for css problem on rtd #790
* :ghissue:`796`: working moran plot func
* :ghissue:`787`: Update docs to reflect Python-3 compatibility
* :ghissue:`587`: ML Lag indexing error on optimization result
* :ghissue:`793`: Getting weights doctests to pass
* :ghissue:`791`: Doc/rolling
* :ghissue:`792`: Local Moran was using the incorrect moments in z_sim and p_z_sim
* :ghissue:`674`: Have PySAL included on OSGeo Live 9
* :ghissue:`779`: DistanceBand include the point itself as neighbor
v<1.11.1>, 2016-04-01
We closed a total of 62 issues, 20 pull requests and 42 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (20):
* :ghpull:`777`: fix minor issues with using stdlib warnings in mapclassify.py
* :ghpull:`766`: Constant check
* :ghpull:`781`: Dev
* :ghpull:`778`: Wkb
* :ghpull:`776`: Updating & find-bin-as-call for Map_Classifiers
* :ghpull:`770`: adding github chrome to make project contributions easier to handle
* :ghpull:`764`: add folium changes needed for notebook to run
* :ghpull:`760`: Update docs for #697
* :ghpull:`763`: docs fix: incorrect array dimensions listed for spatial interaction SpaceTimeEvents
* :ghpull:`756`: B726
* :ghpull:`749`: remove cruft in git root and add gitter badge to the readme
* :ghpull:`748`: Replace deprecated np.rank with np.ndim
* :ghpull:`745`: Lag Categorical & Find Bins
* :ghpull:`741`: fix for #740
* :ghpull:`739`: Dev
* :ghpull:`738`: fixing master version
* :ghpull:`737`: Bumping dev
* :ghpull:`736`: Merge pull request #734 from sjsrey/master
* :ghpull:`735`: Dev in sync with master for 1.11
* :ghpull:`734`: Release 1.11
Issues (42):
* :ghissue:`773`: add isKDTree typecomparison to handle divergent cKDTree and KDTree types
* :ghissue:`777`: fix minor issues with using stdlib warnings in mapclassify.py
* :ghissue:`766`: Constant check
* :ghissue:`782`: Contrib docs
* :ghissue:`781`: Dev
* :ghissue:`762`: viz: folium_mapping.ipynb AttributeError: 'Map' object has no attribute '_build_map'
* :ghissue:`778`: Wkb
* :ghissue:`776`: Updating & find-bin-as-call for Map_Classifiers
* :ghissue:`770`: adding github chrome to make project contributions easier to handle
* :ghissue:`774`: Added a prototype for constructing weights from a list of shapely Polygons
* :ghissue:`772`: knnW user guide doc error
* :ghissue:`765`: potential constant_check bug
* :ghissue:`759`: Fixed code in ipython notebooks
* :ghissue:`752`: [WIP] Add J function to network submodule
* :ghissue:`764`: add folium changes needed for notebook to run
* :ghissue:`760`: Update docs for #697
* :ghissue:`763`: docs fix: incorrect array dimensions listed for spatial interaction SpaceTimeEvents
* :ghissue:`750`: Add gitter badge to README on master branch
* :ghissue:`758`: Fixed code in ipython notebooks
* :ghissue:`755`: add speedup of conditional randomization
* :ghissue:`726`: Compatibility for Scipy 16.1
* :ghissue:`756`: B726
* :ghissue:`749`: remove cruft in git root and add gitter badge to the readme
* :ghissue:`587`: ML Lag
* :ghissue:`748`: Replace deprecated np.rank with np.ndim
* :ghissue:`747`: Replace deprecated np.rank with np.ndim
* :ghissue:`653`: network is returning NAN's on diagonal of distance matrix
* :ghissue:`660`: insert zeros on symmetric matrix diagonal
* :ghissue:`745`: Lag Categorical & Find Bins
* :ghissue:`744`: [REBASED] Update moran.py with much faster iterations
* :ghissue:`732`: Update moran.py with much faster iterations
* :ghissue:`743`: [REBASED]: Update moran.py with much faster iterations
* :ghissue:`742`: Links not working
* :ghissue:`740`: Moran_Local's EI is returned as an array instead of a float
* :ghissue:`741`: fix for #740
* :ghissue:`739`: Dev
* :ghissue:`738`: fixing master version
* :ghissue:`737`: Bumping dev
* :ghissue:`151`: Port pysal to python3
* :ghissue:`736`: Merge pull request #734 from sjsrey/master
* :ghissue:`735`: Dev in sync with master for 1.11
* :ghissue:`734`: Release 1.11
v<1.11.0>, 2016-01-27
GitHub stats for 2015/07/29 - 2016/01/27
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 13 authors contributed 216 commits.
* Dani Arribas-Bel
* David Folch
* Levi John Wolf
* Levi Wolf
* Philip Stephens
* Serge Rey
* Sergio Rey
* Wei Kang
* jlaura
* ljw
* ljwolf
* pedrovma
We closed a total of 86 issues, 33 pull requests and 53 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (33):
* :ghpull:`724`: add synchronization tool
* :ghpull:`733`: Fb/bump
* :ghpull:`731`: Small docfixes
* :ghpull:`730`: Contrib docs
* :ghpull:`728`: B179
* :ghpull:`727`: Geodf io
* :ghpull:`725`: try pinning scipy,numpy
* :ghpull:`723`: make sure to test all moran classes
* :ghpull:`720`: Moving natural breaks to a cleaner kmeans implementation
* :ghpull:`718`: force counts to be same length as bins
* :ghpull:`714`: Dev
* :ghpull:`715`: Heads
* :ghpull:`713`: Enh712
* :ghpull:`710`: Patsy/Pandas wrapper
* :ghpull:`711`: Travis fixes
* :ghpull:`706`: precommit hook
* :ghpull:`707`: Keep dev updated with any bugfixes into master
* :ghpull:`702`: fix for chi2 test 0 denominator and invocation of chi2 test in LISA_Markov
* :ghpull:`704`: Allcloser
* :ghpull:`703`: Swapping to Allclose and RTOL=.00005 in spreg
* :ghpull:`701`: By col array
* :ghpull:`700`: small optimization of bivariate moran motivated by #695
* :ghpull:`696`: Pypi
* :ghpull:`691`: Update doctest for one-off bug that was fixed with #690
* :ghpull:`690`: fix for lisa markov one off for significance indicator
* :ghpull:`689`: Clpy flex w
* :ghpull:`688`: pep 8 edits
* :ghpull:`687`: Change array assertions into allclose
* :ghpull:`686`: Moran local bivariate
* :ghpull:`684`: 591
* :ghpull:`682`: release instructions updated
* :ghpull:`681`: version bump for next dev cycle
* :ghpull:`680`: Rel1.10
Issues (53):
* :ghissue:`705`: spreg check valve
* :ghissue:`344`: Explore new dependency on ogr
* :ghissue:`459`: Problem with bandwidth
* :ghissue:`552`: Viz organization
* :ghissue:`491`: Test np.allclose() for unit tests
* :ghissue:`529`: Clarity needed on proper reference formatting in sphinx docs
* :ghissue:`699`: Trouble importing pysal - ImportError: DLL load failed
* :ghissue:`716`: `min_threshold_dist_from_shapefile` creating an island in some cases
* :ghissue:`724`: add synchronization tool
* :ghissue:`733`: Fb/bump
* :ghissue:`731`: Small docfixes
* :ghissue:`730`: Contrib docs
* :ghissue:`719`: pysal not working with matplotlib v1.5 for plot_lisa_cluster, plot_choropleth, etc.
* :ghissue:`728`: B179
* :ghissue:`727`: Geodf io
* :ghissue:`725`: try pinning scipy,numpy
* :ghissue:`723`: make sure to test all moran classes
* :ghissue:`720`: Moving natural breaks to a cleaner kmeans implementation
* :ghissue:`717`: esda.mapclassify return problematic counts when there is 0 occurrence in the last class
* :ghissue:`718`: force counts to be same length as bins
* :ghissue:`714`: Dev
* :ghissue:`712`: `block_weights` does not take argument `idVariable`
* :ghissue:`715`: Heads
* :ghissue:`713`: Enh712
* :ghissue:`710`: Patsy/Pandas wrapper
* :ghissue:`711`: Travis fixes
* :ghissue:`706`: precommit hook
* :ghissue:`708`: 2-3: is six a dependency or do we ship it?
* :ghissue:`707`: Keep dev updated with any bugfixes into master
* :ghissue:`702`: fix for chi2 test 0 denominator and invocation of chi2 test in LISA_Markov
* :ghissue:`704`: Allcloser
* :ghissue:`703`: Swapping to Allclose and RTOL=.00005 in spreg
* :ghissue:`698`: Py3merge
* :ghissue:`701`: By col array
* :ghissue:`700`: small optimization of bivariate moran motivated by #695
* :ghissue:`695`: Bivariate global moran's I formula
* :ghissue:`683`: Py3 Conversion Project
* :ghissue:`694`: Allclose in SPREG
* :ghissue:`696`: Pypi
* :ghissue:`691`: Update doctest for one-off bug that was fixed with #690
* :ghissue:`693`: Trouble installation: No module named 'shapes'
* :ghissue:`690`: fix for lisa markov one off for significance indicator
* :ghissue:`689`: Clpy flex w
* :ghissue:`688`: pep 8 edits
* :ghissue:`685`: BV Lisa
* :ghissue:`687`: Change array assertions into allclose
* :ghissue:`686`: Moran local bivariate
* :ghissue:`677`: Make meta importable from base
* :ghissue:`684`: 591
* :ghissue:`682`: release instructions updated
* :ghissue:`679`: pysal.cg.sphere.fast_knn bug
* :ghissue:`681`: version bump for next dev cycle
* :ghissue:`680`: Rel1.10
v<1.10.0>, 2015-07-29
GitHub stats for 2015/01/31 - 2015/07/29
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 20 authors contributed 334 commits.
* Charlie Schmidt
* Dani Arribas-Bel
* Daniel Arribas-Bel
* David C. Folch
* David Folch
* Jay
* Levi John Wolf
* Marynia
* Philip Stephens
* Serge Rey
* Sergio Rey
* Taylor Oshan
* The Gitter Badger
* Wei Kang
* jay
* jlaura
* ljw
* ljwolf
* luc
* pedrovma
We closed a total of 156 issues, 58 pull requests and 98 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (58):
* :ghpull:`675`: Update README.md
* :ghpull:`673`: Adding init at pdutilities so they are importable
* :ghpull:`672`: ENH: option to locate legend
* :ghpull:`669`: add nonsudo travis
* :ghpull:`666`: Cleaned up conflicts in ref branch
* :ghpull:`664`: Lisa map
* :ghpull:`663`: Examples
* :ghpull:`661`: Reorganization of examples
* :ghpull:`657`: Assuncao test division errors
* :ghpull:`649`: Add a Gitter chat badge to README.md
* :ghpull:`647`: Addresses 646
* :ghpull:`645`: Update to weights module documentation for PySAL-REST
* :ghpull:`644`: removed test print statements from df2dbf
* :ghpull:`643`: using dtypes.name in df2dbf to avoid gotcha in type
* :ghpull:`642`: Updating copyright year
* :ghpull:`634`: allows non-symmetric distance matrices
* :ghpull:`641`: turning off generatetree
* :ghpull:`592`: adding check for version #591
* :ghpull:`636`: vertical line point simulation
* :ghpull:`639`: Snapping
* :ghpull:`640`: Add users to travis
* :ghpull:`627`: Networkrb
* :ghpull:`631`: Fixing typoes in analysis.py
* :ghpull:`626`: cast arrays over inconsistent kdtree return types
* :ghpull:`620`: adding explicit check for random region contiguity
* :ghpull:`619`: Fixing spreg's warnings
* :ghpull:`618`: initial folder with dbf utilities using pandas
* :ghpull:`616`: Adding isolation and theil indices to inequality._indices.py
* :ghpull:`615`: Network docs
* :ghpull:`614`: cleaning up pr testing
* :ghpull:`613`: test coverage to 98% on network
* :ghpull:`612`: small change for testing PR
* :ghpull:`611`: stubbed in minimal tests
* :ghpull:`607`: B603
* :ghpull:`602`: Documentation Extraction Notebook
* :ghpull:`606`: pct_nonzero was reporting a ratio not a percentage
* :ghpull:`604`: Contribpush
* :ghpull:`601`: Documentation Cleanup
* :ghpull:`599`: Casting bugfix from #598
* :ghpull:`600`: Updates for coveralls
* :ghpull:`598`: IO in Python 3
* :ghpull:`597`: Decoupling bbox from map_XXX_poly
* :ghpull:`595`: Removed testing line in travis.yml and added a .coveragerc file to manag...
* :ghpull:`590`: using numpy sum method
* :ghpull:`589`: Wconstructor
* :ghpull:`588`: Coveralls
* :ghpull:`585`: Fisher Jenks bug in `plot_choropleth`
* :ghpull:`584`: Alpha in plot chor
* :ghpull:`583`: Fixed 576
* :ghpull:`580`: working on #576
* :ghpull:`578`: Fixes #577
* :ghpull:`574`: Handle case where a region has a 0 share.
* :ghpull:`571`: Dict to unique value mapper
* :ghpull:`570`: numpy doc cleanup for weights module
* :ghpull:`569`: folium viz scripts
* :ghpull:`568`: inline with numpy doc spec (spatial_dynamics module)
* :ghpull:`567`: New/masterbump
* :ghpull:`566`: Fix for 1.9.0 missing file in setup.py
Issues (98):
* :ghissue:`675`: Update README.md
* :ghissue:`658`: Travis.CI """Legacy""" architecture
* :ghissue:`667`: Examples Not Found
* :ghissue:`673`: Adding init at pdutilities so they are importable
* :ghissue:`672`: ENH: option to locate legend
* :ghissue:`669`: add nonsudo travis
* :ghissue:`671`: Shapefile Read - PolygonM Attribute Error
* :ghissue:`670`: examples README markdown files reformatting
* :ghissue:`668`: Wconstructor
* :ghissue:`666`: Cleaned up conflicts in ref branch
* :ghissue:`664`: Lisa map
* :ghissue:`662`: Pep8
* :ghissue:`665`: Refs
* :ghissue:`663`: Examples
* :ghissue:`573`: Examples
* :ghissue:`661`: Reorganization of examples
* :ghissue:`656`: Assuncao rate improper division
* :ghissue:`657`: Assuncao test division errors
* :ghissue:`280`: handle multi-segment links in net_shp_io.py
* :ghissue:`649`: Add a Gitter chat badge to README.md
* :ghissue:`647`: Addresses 646
* :ghissue:`646`: arc distance in knnW
* :ghissue:`645`: Update to weights module documentation for PySAL-REST
* :ghissue:`644`: removed test print statements from df2dbf
* :ghissue:`643`: using dtypes.name in df2dbf to avoid gotcha in type
* :ghissue:`603`: Polygon.contains_point does not correctly process multipart polygons.
* :ghissue:`642`: Updating copyright year
* :ghissue:`623`: reading road shapfiles into network
* :ghissue:`608`: Scipy Sparse Graph
* :ghissue:`621`: network distance speedup
* :ghissue:`632`: network point snapping
* :ghissue:`633`: point to point distances on network
* :ghissue:`635`: simulating points on vertical lines
* :ghissue:`634`: allows non-symmetric distance matrices
* :ghissue:`641`: turning off generatetree
* :ghissue:`637`: speedup distance computations
* :ghissue:`592`: adding check for version #591
* :ghissue:`628`: Re-enable doctests
* :ghissue:`636`: vertical line point simulation
* :ghissue:`639`: Snapping
* :ghissue:`640`: Add users to travis
* :ghissue:`638`: Add users to Travis
* :ghissue:`627`: Networkrb
* :ghissue:`622`: New network branch from clean master
* :ghissue:`630`: NetworkG api is broken
* :ghissue:`631`: Fixing typoes in analysis.py
* :ghissue:`625`: Installation - Binstar and Anaconda
* :ghissue:`624`: Network topology
* :ghissue:`629`: changes to spreg tests for travis
* :ghissue:`166`: pysal.esda.mapclassify.Fisher_Jenks - local variable 'best' referenced before assignment
* :ghissue:`626`: cast arrays over inconsistent kdtree return types
* :ghissue:`596`: [question] unsupervised classification
* :ghissue:`620`: adding explicit check for random region contiguity
* :ghissue:`617`: Random_Region not respecting contiguity constraint
* :ghissue:`619`: Fixing spreg's warnings
* :ghissue:`618`: initial folder with dbf utilities using pandas
* :ghissue:`616`: Adding isolation and theil indices to inequality._indices.py
* :ghissue:`615`: Network docs
* :ghissue:`614`: cleaning up pr testing
* :ghissue:`613`: test coverage to 98% on network
* :ghissue:`612`: small change for testing PR
* :ghissue:`611`: stubbed in minimal tests
* :ghissue:`607`: B603
* :ghissue:`602`: Documentation Extraction Notebook
* :ghissue:`606`: pct_nonzero was reporting a ratio not a percentage
* :ghissue:`605`: RTree Weights
* :ghissue:`604`: Contribpush
* :ghissue:`601`: Documentation Cleanup
* :ghissue:`554`: Beginning documentation cleanup
* :ghissue:`599`: Casting bugfix from #598
* :ghissue:`600`: Updates for coveralls
* :ghissue:`598`: IO in Python 3
* :ghissue:`597`: Decoupling bbox from map_XXX_poly
* :ghissue:`595`: Removed testing line in travis.yml and added a .coveragerc file to manag...
* :ghissue:`586`: Look at using Coveralls
* :ghissue:`590`: using numpy sum method
* :ghissue:`589`: Wconstructor
* :ghissue:`588`: Coveralls
* :ghissue:`576`: Predecessor lists inconsistencies
* :ghissue:`585`: Fisher Jenks bug in `plot_choropleth`
* :ghissue:`584`: Alpha in plot chor
* :ghissue:`583`: Fixed 576
* :ghissue:`582`: Fixes #576
* :ghissue:`581`: Network
* :ghissue:`580`: working on #576
* :ghissue:`575`: Network from Lattice
* :ghissue:`578`: Fixes #577
* :ghissue:`577`: bug in FileIO.cast
* :ghissue:`574`: Handle case where a region has a 0 share.
* :ghissue:`343`: Edge Segmentation
* :ghissue:`571`: Dict to unique value mapper
* :ghissue:`570`: numpy doc cleanup for weights module
* :ghissue:`569`: folium viz scripts
* :ghissue:`568`: inline with numpy doc spec (spatial_dynamics module)
* :ghissue:`567`: New/masterbump
* :ghissue:`564`: Bug in setup.py
* :ghissue:`566`: Fix for 1.9.0 missing file in setup.py
* :ghissue:`565`: Bsetup
v<1.9.1>, 2015-01-31
GitHub stats for 2015/01/30 - 2015/01/31
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 4 authors contributed 14 commits.
* Dani Arribas-Bel
* Serge Rey
* Sergio Rey
* jlaura
We closed a total of 8 issues, 3 pull requests and 5 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (3):
* :ghpull:`566`: Fix for 1.9.0 missing file in setup.py
* :ghpull:`563`: Updating release instructions
* :ghpull:`561`: Rolling over to 1.10
Issues (5):
* :ghissue:`566`: Fix for 1.9.0 missing file in setup.py
* :ghissue:`565`: Bsetup
* :ghissue:`563`: Updating release instructions
* :ghissue:`562`: adjustments to release management
* :ghissue:`561`: Rolling over to 1.10
v<1.9.0>, 2015-01-30
GitHub stats for 2014/07/25 - 2015/01/30
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 12 authors contributed 131 commits.
* Andy Reagan
* Dani Arribas-Bel
* Jay
* Levi John Wolf
* Philip Stephens
* Qunshan
* Serge Rey
* jlaura
* ljwolf
* luc
We closed a total of 113 issues, 44 pull requests and 69 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (44):
* :ghpull:`560`: modifying import scheme for network module
* :ghpull:`559`: Network2
* :ghpull:`558`: Network2
* :ghpull:`557`: Network2
* :ghpull:`556`: Added analytical functions and edge segmentation
* :ghpull:`550`: Network2
* :ghpull:`553`: correction in denominator of spatial tau.
* :ghpull:`547`: Updates to get network integrated
* :ghpull:`544`: update .gitignore
* :ghpull:`543`: k nearest neighbor gwt example file for baltimore points (with k=4) added to examples directory
* :ghpull:`542`: new format nat_queen.gal file added to examples directory
* :ghpull:`541`: Update tutorial docs for new book
* :ghpull:`540`: doc: updating instructions for anaconda and enthought
* :ghpull:`539`: doc: pysal is now on sagemathcloud
* :ghpull:`538`: Clean up of cg and fixes of other doctests/formats
* :ghpull:`536`: adding entry for getis ord module
* :ghpull:`537`: new opendata module for contrib
* :ghpull:`535`: Add method for extracting data columns as Numpy array rather than list
* :ghpull:`534`: added geogrid to __all__ in sphere.py
* :ghpull:`533`: added geogrid function to create a grid of points on a sphere
* :ghpull:`532`: new functions to deal with spherical geometry: lat-lon conversion, degre...
* :ghpull:`530`: I390
* :ghpull:`528`: Replacing 0 by min value in choropleths
* :ghpull:`526`: B166
* :ghpull:`525`: copyright update
* :ghpull:`524`: New homogeneity tests for general case and spatial markov as a special case
* :ghpull:`523`: pointing to github.io pages
* :ghpull:`520`: Same typo. Toolkit.
* :ghpull:`518`: Update util.py
* :ghpull:`519`: Typo
* :ghpull:`517`: Documentation correction for Prais Conditional Mobility Index
* :ghpull:`516`: ENH for https://github.com/PySAL/PySAL.github.io/issues/17
* :ghpull:`515`: BUG: conditional check for extension of lower bound of colorbar to conta...
* :ghpull:`514`: ENH: adding the user_defined classification
* :ghpull:`513`: rewriting to not use ipython notebook --pylab=line
* :ghpull:`512`: Viz
* :ghpull:`508`: Adding barebones pysal2matplotlib options in viz
* :ghpull:`511`: DOC updating news
* :ghpull:`507`: Sched
* :ghpull:`510`: BUG: fix for #509
* :ghpull:`506`: 1.9dev
* :ghpull:`505`: REL bumping master to 1.9.0dev
* :ghpull:`504`: Release prep 1.8
* :ghpull:`503`: Grid for landing page
Issues (69):
* :ghissue:`560`: modifying import scheme for network module
* :ghissue:`559`: Network2
* :ghissue:`558`: Network2
* :ghissue:`557`: Network2
* :ghissue:`556`: Added analytical functions and edge segmentation
* :ghissue:`555`: Added edge segmentation by distance
* :ghissue:`550`: Network2
* :ghissue:`553`: correction in denominator of spatial tau.
* :ghissue:`549`: Network2
* :ghissue:`547`: Updates to get network integrated
* :ghissue:`548`: Installation Issues
* :ghissue:`546`: Network2
* :ghissue:`545`: Network
* :ghissue:`544`: update .gitignore
* :ghissue:`543`: k nearest neighbor gwt example file for baltimore points (with k=4) added to examples directory
* :ghissue:`542`: new format nat_queen.gal file added to examples directory
* :ghissue:`541`: Update tutorial docs for new book
* :ghissue:`540`: doc: updating instructions for anaconda and enthought
* :ghissue:`539`: doc: pysal is now on sagemathcloud
* :ghissue:`538`: Clean up of cg and fixes of other doctests/formats
* :ghissue:`536`: adding entry for getis ord module
* :ghissue:`537`: new opendata module for contrib
* :ghissue:`535`: Add method for extracting data columns as Numpy array rather than list
* :ghissue:`534`: added geogrid to __all__ in sphere.py
* :ghissue:`533`: added geogrid function to create a grid of points on a sphere
* :ghissue:`532`: new functions to deal with spherical geometry: lat-lon conversion, degre...
* :ghissue:`390`: add option to have local moran quadrant codes align with geoda
* :ghissue:`530`: I390
* :ghissue:`528`: Replacing 0 by min value in choropleths
* :ghissue:`526`: B166
* :ghissue:`176`: contrib module for proj 4
* :ghissue:`178`: contrib module for gdal/org
* :ghissue:`203`: implement network class in spatialnet
* :ghissue:`204`: pysal-networkx util functions
* :ghissue:`209`: csv reader enhancement
* :ghissue:`215`: Add a tutorial for the spreg module
* :ghissue:`244`: ps.knnW_from_shapefile returns wrong W ids when idVariable specified
* :ghissue:`246`: Only use idVariable in W when writing out to file
* :ghissue:`283`: Create new nodes at intersections of edges
* :ghissue:`291`: Enum links around regions hangs
* :ghissue:`292`: Handle multiple filaments within a region in the Wed construction
* :ghissue:`302`: Handle hole polygons when constructing wed
* :ghissue:`309`: Develop consistent solution for precision induced errors in doctests across platforms
* :ghissue:`350`: reading/writing weights file with spaces in the ids
* :ghissue:`450`: x_name and summary method not consistent in ols
* :ghissue:`521`: Nosetests don't accept setup.cfg
* :ghissue:`509`: ESDA bin type inconsistency
* :ghissue:`525`: copyright update
* :ghissue:`524`: New homogeneity tests for general case and spatial markov as a special case
* :ghissue:`523`: pointing to github.io pages
* :ghissue:`520`: Same typo. Toolkit.
* :ghissue:`522`: Nosetests for python3 porting
* :ghissue:`518`: Update util.py
* :ghissue:`519`: Typo
* :ghissue:`517`: Documentation correction for Prais Conditional Mobility Index
* :ghissue:`516`: ENH for https://github.com/PySAL/PySAL.github.io/issues/17
* :ghissue:`515`: BUG: conditional check for extension of lower bound of colorbar to conta...
* :ghissue:`514`: ENH: adding the user_defined classification
* :ghissue:`513`: rewriting to not use ipython notebook --pylab=line
* :ghissue:`512`: Viz
* :ghissue:`508`: Adding barebones pysal2matplotlib options in viz
* :ghissue:`511`: DOC updating news
* :ghissue:`507`: Sched
* :ghissue:`510`: BUG: fix for #509
* :ghissue:`502`: spreg.ml_lag.ML_Lag is very very very time-consuming?
* :ghissue:`506`: 1.9dev
* :ghissue:`505`: REL bumping master to 1.9.0dev
* :ghissue:`504`: Release prep 1.8
* :ghissue:`503`: Grid for landing page
v<1.8.0>, 2014-07-25
GitHub stats for 2014/01/29 - 2014/07/25
These lists are automatically generated, and may be incomplete or contain duplicates.
The following 8 authors contributed 281 commits.
* Dani Arribas-Bel
* Jay
* Philip Stephens
* Serge Rey
* Sergio Rey
* jlaura
* pedrovma
* sjsrey
We closed a total of 160 issues, 60 pull requests and 100 regular issues;
this is the full list (generated with the script
:file:`tools/github_stats.py`):
Pull Requests (60):
* :ghpull:`503`: Grid for landing page
* :ghpull:`501`: Two figs rather than three
* :ghpull:`500`: More efficient higher order operations
* :ghpull:`499`: renamed nat_queen.gal for #452
* :ghpull:`497`: ENH Deprecation warning for regime_weights #486
* :ghpull:`494`: Enables testing against two versions of SciPy shipped with the last two Ubuntu LTS versions.
* :ghpull:`490`: Fix for #487
* :ghpull:`492`: BUG cleaning up temporary files for #398
* :ghpull:`493`: Phil: Skipping several tests that fail due to precision under older scipy
* :ghpull:`489`: test suite fixes
* :ghpull:`488`: More tests to skip if scipy less than 11