From 7a328a7eaba756d466d89cecbdba62e80c20ee64 Mon Sep 17 00:00:00 2001
From: Jusong Yu <jusong.yeu@gmail.com>
Date: Thu, 19 Dec 2024 16:20:57 +0100
Subject: [PATCH 1/3] Only emit path to daemon log path in pytest tmp folder

---
 src/aiida/tools/pytest_fixtures/daemon.py | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/src/aiida/tools/pytest_fixtures/daemon.py b/src/aiida/tools/pytest_fixtures/daemon.py
index 89ef02d841..d838e05833 100644
--- a/src/aiida/tools/pytest_fixtures/daemon.py
+++ b/src/aiida/tools/pytest_fixtures/daemon.py
@@ -2,6 +2,7 @@
 
 from __future__ import annotations
 
+import logging
 import pathlib
 import typing as t
 
@@ -9,6 +10,7 @@
 
 if t.TYPE_CHECKING:
     from aiida.engine import Process, ProcessBuilder
+    from aiida.engine.daemon.client import DaemonClient
     from aiida.orm import ProcessNode
 
 
@@ -47,7 +49,7 @@ def test(daemon_client):
 
 
 @pytest.fixture
-def started_daemon_client(daemon_client):
+def started_daemon_client(daemon_client: 'DaemonClient'):
     """Ensure that the daemon is running for the test profile and return the associated client.
 
     Usage::
@@ -60,11 +62,14 @@ def test(started_daemon_client):
         daemon_client.start_daemon()
         assert daemon_client.is_daemon_running
 
+    logger = logging.getLogger('tests.daemon:started_daemon_client')
+    logger.debug(f'Daemon log file is located at: {daemon_client.daemon_log_file}')
+
     yield daemon_client
 
 
 @pytest.fixture
-def stopped_daemon_client(daemon_client):
+def stopped_daemon_client(daemon_client: 'DaemonClient'):
     """Ensure that the daemon is not running for the test profile and return the associated client.
 
     Usage::

From 411da050514ac1ea8b73252344ee7dfe678145ca Mon Sep 17 00:00:00 2001
From: Jusong Yu <jusong.yeu@gmail.com>
Date: Thu, 16 Jan 2025 11:51:28 +0100
Subject: [PATCH 2/3] uv lock --upgrade

---
 uv.lock | 354 +++++++++++++++++++++++++++++---------------------------
 1 file changed, 183 insertions(+), 171 deletions(-)

diff --git a/uv.lock b/uv.lock
index c503a4264b..8facf246eb 100644
--- a/uv.lock
+++ b/uv.lock
@@ -24,7 +24,6 @@ wheels = [
 
 [[package]]
 name = "aiida-core"
-version = "2.6.2.post0"
 source = { editable = "." }
 dependencies = [
     { name = "alembic" },
@@ -417,7 +416,7 @@ dependencies = [
     { name = "matplotlib", version = "3.10.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
     { name = "numpy" },
     { name = "scipy", version = "1.13.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version < '3.10'" },
-    { name = "scipy", version = "1.15.0", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
+    { name = "scipy", version = "1.15.1", source = { registry = "https://pypi.org/simple" }, marker = "python_full_version >= '3.10'" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/5c/c9/9adb9bc641bd7222367886e4e6c753b4c64da4ff2d9565ab39aee1e34734/ase-3.24.0.tar.gz", hash = "sha256:9acc93d6daaf48cd27b844c56f8bf49428b9db0542faa3cc30d9d5b8e1842195", size = 2383264 }
 wheels = [
@@ -2759,7 +2758,7 @@ wheels = [
 
 [[package]]
 name = "nbclassic"
-version = "1.1.0"
+version = "1.2.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "ipykernel" },
@@ -2767,9 +2766,9 @@ dependencies = [
     { name = "nest-asyncio" },
     { name = "notebook-shim" },
 ]
-sdist = { url = "https://files.pythonhosted.org/packages/44/96/8e506bba6faf6bc299fbf783d2c22dd959f7b2aee63fe8913ebdc78cba8d/nbclassic-1.1.0.tar.gz", hash = "sha256:77b77ba85f9e988f9bad85df345b514e9e64c7f0e822992ab1df4a78ac64fc1e", size = 20194834 }
+sdist = { url = "https://files.pythonhosted.org/packages/0f/20/194d1bf71e09bb42ba7f11e5d0786af314b76aeca67b3bd1f44e572630f1/nbclassic-1.2.0.tar.gz", hash = "sha256:736ec50483a54485971db213be9207e34e51fc144c78343625b69917423644ba", size = 20204389 }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/56/a3/189966341f52d7f2cc4755bc4e4083fd86b503c69d4ba4ea8422d0450e0f/nbclassic-1.2.0-py3-none-any.whl", hash = "sha256:61cc3612dae9d418d6c3577f7c6d8dad1d6a81b68e7a12585483283d5c92ec37", size = 9995726 },
 ]
 
 [[package]]
@@ -3085,7 +3084,7 @@ name = "pexpect"
 version = "4.9.0"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
-    { name = "ptyprocess", marker = "python_full_version < '3.10' or sys_platform != 'win32'" },
+    { name = "ptyprocess" },
 ]
 sdist = { url = "https://files.pythonhosted.org/packages/42/92/cc564bf6381ff43ce1f4d06852fc19a2f11d180f23dc32d9588bee2f149d/pexpect-4.9.0.tar.gz", hash = "sha256:ee7d41123f3c9911050ea2c2dac107568dc43b2d3b0c7557a33212c398ead30f", size = 166450 }
 wheels = [
@@ -3404,15 +3403,15 @@ wheels = [
 
 [[package]]
 name = "psycopg"
-version = "3.2.3"
+version = "3.2.4"
 source = { registry = "https://pypi.org/simple" }
 dependencies = [
     { name = "typing-extensions", marker = "python_full_version < '3.13'" },
     { name = "tzdata", marker = "sys_platform == 'win32'" },
 ]
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+sdist = { url = "https://files.pythonhosted.org/packages/e0/f2/954b1467b3e2ca5945b83b5e320268be1f4df486c3e8ffc90f4e4b707979/psycopg-3.2.4.tar.gz", hash = "sha256:f26f1346d6bf1ef5f5ef1714dd405c67fb365cfd1c6cea07de1792747b167b92", size = 156109 }
 wheels = [
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+    { url = "https://files.pythonhosted.org/packages/40/49/15114d5f7ee68983f4e1a24d47e75334568960352a07c6f0e796e912685d/psycopg-3.2.4-py3-none-any.whl", hash = "sha256:43665368ccd48180744cab26b74332f46b63b7e06e8ce0775547a3533883d381", size = 198716 },
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 [package.optional-dependencies]
@@ -3422,63 +3421,64 @@ binary = [
 
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 [[package]]

From dfbd544611d454bc750d78790ae322dfba324e61 Mon Sep 17 00:00:00 2001
From: Jusong Yu <jusong.yeu@gmail.com>
Date: Thu, 16 Jan 2025 12:28:38 +0100
Subject: [PATCH 3/3] bump uv version to 0.5.20

---
 .readthedocs.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.readthedocs.yml b/.readthedocs.yml
index 777f7f19a8..b21c0c5bec 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -17,8 +17,8 @@ build:
     # https://docs.readthedocs.io/en/stable/build-customization.html#install-dependencies-with-uv
     pre_create_environment:
     - asdf plugin add uv
-    - asdf install uv 0.5.17
-    - asdf global uv 0.5.17
+    - asdf install uv 0.5.20
+    - asdf global uv 0.5.20
     create_environment:
     - uv venv
     install: