test.yml

name: Tests

on:
  push:
    branches:
      - main
      - checks
  pull_request:
    branches:
      - main

# Cancels all previous workflow runs for pull requests that have not completed.
concurrency:
  # The concurrency group contains the workflow name and the branch name for pull requests
  # or the commit hash for any other events.
  group: ${{ github.workflow }}-${{ github.event_name == 'pull_request' && github.head_ref || github.sha }}
  cancel-in-progress: true

jobs:
  changes:
    name: "Check for changes"
    runs-on: ubuntu-latest
    outputs:
      changes: ${{ steps.changes.outputs.src }}
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - uses: dorny/paths-filter@v2
        id: changes
        with:
          filters: |
            python: &python
            - 'aemcmc/**/*.py'
            - 'tests/**/*.py'
            - 'aemcmc/**/*.pyx'
            - 'tests/**/*.pyx'
            - '*.py'
            src:
            - *python
            - 'aemcmc/**/*.c'
            - 'tests/**/*.c'
            - 'aemcmc/**/*.h'
            - 'tests/**/*.h'
            - '.github/workflows/*.yml'
            - 'setup.cfg'
            - 'requirements.txt'

  style:
    name: Check code style
    needs: changes
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    - uses: actions/setup-python@v4
      with:
        python-version: "3.9"
    - uses: pre-commit/action@v3.0.0

  test:
    name: "Test py${{ matrix.python-version }}: ${{ matrix.part }}"
    needs:
      - changes
      - style
    runs-on: ubuntu-latest
    if: ${{ needs.changes.outputs.changes == 'true' && needs.style.result == 'success' }}
    strategy:
      fail-fast: true
      matrix:
        python-version: ["3.8", "3.10"]
        fast-compile: [0]
        float32: [0]
        part:
          - "tests"

    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      - name: Set up Python ${{ matrix.python-version }}
        uses: conda-incubator/setup-miniconda@v2
        with:
          miniforge-variant: Mambaforge
          miniforge-version: latest
          channels: conda-forge,defaults
          channel-priority: true
          python-version: ${{ matrix.python-version }}

      - name: Create matrix id
        id: matrix-id
        env:
          MATRIX_CONTEXT: ${{ toJson(matrix) }}
        run: |
          echo $MATRIX_CONTEXT
          export MATRIX_ID=`echo $MATRIX_CONTEXT | md5sum | cut -c 1-32`
          echo $MATRIX_ID
          echo "::set-output name=id::$MATRIX_ID"

      - name: Install dependencies
        shell: bash -l {0}
        run: |
          mamba install --yes -q "python~=${PYTHON_VERSION}=*_cpython" mkl numpy scipy pip mkl-service
          pip install -q -r requirements.txt
          mamba list && pip freeze
          python -c 'import aesara; print(aesara.config.__str__(print_doc=False))'
          python -c 'import aesara; assert(aesara.config.blas__ldflags != "")'
        env:
          PYTHON_VERSION: ${{ matrix.python-version }}

      - name: Run tests
        shell: bash -l {0}
        run: |
          if [[ $FAST_COMPILE == "1" ]]; then export AESARA_FLAGS=$AESARA_FLAGS,mode=FAST_COMPILE; fi
          if [[ $FLOAT32 == "1" ]]; then export AESARA_FLAGS=$AESARA_FLAGS,floatX=float32; fi
          export AESARA_FLAGS=$AESARA_FLAGS,warn__ignore_bug_before=all,on_opt_error=raise,on_shape_error=raise,gcc__cxxflags=-pipe
          python -m pytest -x -r A --verbose --cov=aemcmc/ --cov-report=xml:coverage/coverage-${MATRIX_ID}.xml --no-cov-on-fail $PART
        env:
          MATRIX_ID: ${{ steps.matrix-id.outputs.id }}
          MKL_THREADING_LAYER: GNU
          MKL_NUM_THREADS: 1
          OMP_NUM_THREADS: 1
          PART: ${{ matrix.part }}
          FAST_COMPILE: ${{ matrix.fast-compile }}
          FLOAT32: ${{ matrix.float32 }}

      - name: Upload coverage file
        uses: actions/upload-artifact@v2
        with:
          name: coverage
          path: coverage/coverage-${{ steps.matrix-id.outputs.id }}.xml

  all-checks:
    if: ${{ always() }}
    runs-on: ubuntu-latest
    name: "All tests"
    needs: [changes, style, test]
    steps:
      - name: Check build matrix status
        if: ${{ needs.changes.outputs.changes == 'true' && (needs.style.result != 'success' || needs.test.result != 'success') }}
        run: exit 1

  upload-coverage:
    runs-on: ubuntu-latest
    name: "Upload coverage"
    needs: [changes, all-checks]
    if: ${{ needs.changes.outputs.changes == 'true' && needs.all-checks.result == 'success' }}
    steps:
      - uses: actions/checkout@v3

      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.9

      - name: Install dependencies
        run: |
          python -m pip install -U coverage>=5.1 coveralls

      - name: Download coverage file
        uses: actions/download-artifact@v2
        with:
          name: coverage
          path: coverage

      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v1
        with:
          directory: ./coverage/
          fail_ci_if_error: true