README

# Y-tools
## Toolkit for analysis of immune repertoires
### Version: see VERSION

Developed in Center for Algorithmic Biotechnology, Saint Petersburg State University

#### Current contributors:
*  Yana Safonova
*  Alexander Shlemov
*  Andrey Bzikadze
*  Sergey Bankevich
*  Andrey Slabodkin
*  Alla Lapidus
*  Pavel A. Pevzner

#### Also contributed:
*  Eugene Kurpilyansky
*  Ekaterina Starostina

Installation instructions and manual can be found on the website:
<http://cab.spbu.ru/software/y-tools/>

#### References:
* __IgReC / BarcodedIgReC / IgQUAST / IgDiversityAnalyzer:__ Alexander
Shlemov, Sergey Bankevich, Andrey Bzikadze, Dmitry Chudakov, Yana Safonova, and
Pavel A. Pevzner. _Reconstructing antibody repertoires from error-prone immunosequencing datasets._ J Immunol October 4, 2017, ji1700485; DOI: <https://doi.org/10.4049/jimmunol.1700485>

* __Immunoproteogenomics search / DSF:__ Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla Lapidus, Jeremy Stinson,
Laura DePalatis, Wendy Sandoval, Jennie Lill and Pavel A. Pevzner. _IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis._  Bioinformatics. 2015 Jun 15;31(12):i53-i61.