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# On branch master
# Changes to be committed:
# (use "git reset HEAD <file>..." to unstage)
#
# modified: makefile
#
# Changes not staged for commit:
# (use "git add <file>..." to update what will be committed)
# (use "git checkout -- <file>..." to discard changes in working directory)
#
# modified: param.cpp
# modified: test/example.normal.bam
# modified: test/run.sh
#
# Untracked files:
# (use "git add <file>..." to include in what will be committed)
#
# .distribution.cpp.swp
# bamreader.o
# chi.o
# cmds.o
# distribution.o
# homo.o
# param.o
# polyscan.o
# refseq.o
# sample.o
# scan.o
# somatic.o
# tags
# test/example.output
# test/example.output_dis
# test/example.output_germline
# test/example.output_somatic
# test/log.txt
# test/microsatellites.list
# test/normal.sam
# utilities.o
# window.o