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environment.yaml
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name: oncode-mc
channels:
- powerai
- pytorch
- anaconda
- conda-forge
- bioconda
- r
- defaults
dependencies:
- _r-mutex=1.0.1=anacondar_1
- absl-py=0.10.0=py37hc8dfbb8_1
- appnope=0.1.0=py37hf985489_1002
- argon2-cffi=20.1.0=py37h4b544eb_2
- astor=0.8.1=pyh9f0ad1d_0
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- bioconductor-annotate=1.68.0=r40_0
- bioconductor-annotationdbi=1.52.0=r40_0
- bioconductor-biobase=2.50.0=r40h8909d69_0
- bioconductor-biocgenerics=0.36.0=r40_0
- bioconductor-biocparallel=1.24.0=r40h64ad5ed_0
- bioconductor-edger=3.32.0=r40h64ad5ed_0
- bioconductor-genefilter=1.72.0=r40hbb27dc6_0
- bioconductor-iranges=2.24.0=r40h8909d69_0
- bioconductor-limma=3.46.0=r40h8909d69_0
- bioconductor-pcamethods=1.82.0=r40h64ad5ed_0
- bioconductor-preprocesscore=1.52.0=r40h8909d69_0
- bioconductor-s4vectors=0.28.0=r40h8909d69_0
- bioconductor-sva=3.38.0=r40h8909d69_0
- bleach=3.2.1=pyh9f0ad1d_0
- blosc=1.20.1=hb1e8313_0
- brotli=1.0.9=hb1e8313_3
- brotlipy=0.7.0=py37h395d20d_1001
- brunsli=0.1=hb1e8313_0
- bwidget=1.9.14=h694c41f_0
- bzip2=1.0.8=haf1e3a3_3
- c-ares=1.16.1=haf1e3a3_3
- ca-certificates=2020.11.8=h033912b_0
- cached-property=1.5.1=py_0
- cairo=1.16.0=he8db5a5_1006
- cctools_osx-64=949.0.1=h8e49ea9_16
- certifi=2020.11.8=py37hf985489_0
- cffi=1.14.3=py37h446cb54_1
- chardet=3.0.4=py37h2987424_1008
- charls=2.1.0=h4a8c4bd_2
- clang=10.0.1=default_hf57f61e_1
- clang_osx-64=10.0.1=h05bbb7f_10
- clangxx=10.0.1=default_hf57f61e_1
- clangxx_osx-64=10.0.1=h05bbb7f_10
- cloudpickle=1.6.0=py_0
- compiler-rt=10.0.1=he6db49b_0
- compiler-rt_osx-64=10.0.1=h033240e_0
- cryptography=3.2.1=py37h3b7a55b_0
- cudatoolkit=9.0=h41a26b3_0
- curl=7.71.1=hcb81553_8
- cycler=0.10.0=py_2
- cytoolz=0.11.0=py37h60d8a13_1
- dask-core=2.30.0=py_0
- dbus=1.13.6=h0c50699_1
- decorator=4.4.2=py_0
- defusedxml=0.6.0=py_0
- dill=0.3.3=pyhd8ed1ab_0
- entrypoints=0.3=pyhd8ed1ab_1003
- expat=2.2.9=hb1e8313_2
- ffmpeg=4.3.1=he496704_1
- fontconfig=2.13.1=h186bf41_1002
- freetype=2.10.4=h3f75d11_0
- fribidi=1.0.10=hbcb3906_0
- future=0.18.2=py37hf985489_2
- gast=0.4.0=pyh9f0ad1d_0
- gettext=0.19.8.1=haf92f58_1004
- gfortran_impl_osx-64=7.5.0=hae4d780_7
- gfortran_osx-64=7.5.0=h044cb63_8
- giflib=5.2.1=hbcb3906_2
- glib=2.66.2=h4961a3e_0
- gmp=6.2.0=h2e338ed_4
- gnutls=3.6.13=hc269f14_0
- google-pasta=0.2.0=pyh8c360ce_0
- googleapis-common-protos=1.52.0=py37hf985489_1
- graphite2=1.3.13=h2e338ed_1001
- grpcio=1.33.2=py37hf15c1da_2
- gsl=2.6=hdac7af7_0
- h5py=3.1.0=nompi_py37h6dbf366_100
- harfbuzz=2.7.2=h73e2de6_1
- hdf5=1.10.6=nompi_hc457bb4_1110
- icu=67.1=hb1e8313_0
- idna=2.10=pyh9f0ad1d_0
- imagecodecs=2020.5.30=py37h56fef80_4
- imageio=2.9.0=py_0
- imbalanced-learn=0.7.0=py_1
- importlib-metadata=2.0.0=py_1
- importlib_metadata=2.0.0=1
- ipykernel=5.3.4=py37he01cfaa_1
- ipython=7.19.0=py37he01cfaa_0
- ipython_genutils=0.2.0=py_1
- ipywidgets=7.5.1=pyh9f0ad1d_1
- isl=0.22.1=hb1e8313_2
- jasper=1.900.1=h636a363_1006
- jedi=0.17.2=py37hf985489_1
- jinja2=2.11.2=pyh9f0ad1d_0
- joblib=0.17.0=py_0
- jpeg=9d=hbcb3906_0
- jsonschema=3.2.0=py_2
- jupyter=1.0.0=py_2
- jupyter_client=6.1.7=py_0
- jupyter_console=6.2.0=py_0
- jupyter_core=4.6.3=py37hf985489_2
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jxrlib=1.1=h0b31af3_2
- keras=2.3.1=py37_0
- keras-applications=1.0.8=py_1
- keras-preprocessing=1.1.0=py_0
- kiwisolver=1.3.1=py37h8ec247f_0
- krb5=1.17.1=h75d18d8_3
- lame=3.100=h1de35cc_1001
- lcms2=2.11=h11f7e16_1
- ld64_osx-64=530=h3c32e8a_7
- ldid=2.1.2=h7660a38_2
- lerc=2.2=hb1e8313_0
- libaec=1.0.4=h4a8c4bd_1
- libblas=3.9.0=2_openblas
- libcblas=3.9.0=2_openblas
- libclang=10.0.1=default_hf57f61e_1
- libclang-cpp10=10.0.1=default_hf57f61e_1
- libcurl=7.71.1=h9bf37e3_8
- libcxx=11.0.0=h439d374_0
- libedit=3.1.20191231=h0678c8f_2
- libev=4.33=haf1e3a3_1
- libffi=3.2.1=hb1e8313_1007
- libgfortran=4.0.0=h50e675f_13
- libgfortran4=7.5.0=h50e675f_13
- libglib=2.66.2=h2fc9090_0
- libgpuarray=0.7.6=h1de35cc_1003
- libiconv=1.16=haf1e3a3_0
- liblapack=3.9.0=2_openblas
- liblapacke=3.9.0=2_openblas
- libllvm10=10.0.1=h009f743_3
- libllvm11=11.0.0=hf85e3d2_0
- libnghttp2=1.41.0=h7580e61_2
- libopenblas=0.3.12=openmp_h63d9170_1
- libopencv=4.5.0=py37_3
- libpng=1.6.37=h7cec526_2
- libpq=12.3=haa216e0_2
- libprotobuf=3.13.0.1=hab81aa3_0
- libsodium=1.0.18=hbcb3906_1
- libssh2=1.9.0=h8a08a2b_5
- libtiff=4.1.0=hca7d577_6
- libwebp-base=1.1.0=hbcb3906_3
- libxml2=2.9.10=h2c6e4a5_2
- libzopfli=1.0.3=h4a8c4bd_0
- llvm-openmp=11.0.0=h73239a0_1
- llvm-tools=10.0.1=h1341992_3
- lz4-c=1.9.2=hb1e8313_3
- make=4.3=h22f3db7_1
- mako=1.1.3=pyh9f0ad1d_0
- markdown=3.3.3=pyh9f0ad1d_0
- markupsafe=1.1.1=py37h395d20d_2
- matplotlib=3.3.3=py37hf985489_0
- matplotlib-base=3.3.3=py37hdacc966_0
- mistune=0.8.4=py37h4b544eb_1002
- mkl=2020.4=h08c4f10_301
- mpc=1.1.0=ha57cd0f_1009
- mpfr=4.0.2=h72d8aaf_1
- mysql-common=8.0.21=2
- mysql-libs=8.0.21=hfb8f7af_2
- nbclient=0.5.1=py_0
- nbconvert=6.0.7=py37hf985489_3
- nbformat=5.0.8=py_0
- ncurses=6.2=h2e338ed_4
- nest-asyncio=1.4.3=pyhd8ed1ab_0
- nettle=3.4.1=h3efe00b_1002
- networkx=2.5=py_0
- ninja=1.10.1=h445f430_2
- notebook=6.1.5=py37hf985489_0
- nspr=4.29=hb1e8313_1
- nss=3.47=hc0980d9_0
- numpy=1.19.4=py37h9ebeaaa_1
- olefile=0.46=pyh9f0ad1d_1
- opencv=4.5.0=py37_3
- openh264=2.1.1=hd174df1_0
- openjpeg=2.3.1=h254dc36_3
- openssl=1.1.1h=haf1e3a3_0
- packaging=20.4=pyh9f0ad1d_0
- pandas=1.1.4=py37h9b0e0a3_0
- pandoc=2.11.1.1=hbcb3906_0
- pandocfilters=1.4.2=py_1
- pango=1.42.4=h3431869_5
- parso=0.7.1=pyh9f0ad1d_0
- patsy=0.5.1=py_0
- pcre=8.44=hb1e8313_0
- pcre2=10.35=hb714718_1
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pillow=8.0.1=py37h09f51b7_0
- pip=20.2.4=py_0
- pixman=0.40.0=hbcb3906_0
- prometheus_client=0.8.0=pyh9f0ad1d_0
- promise=2.3=py37hc8dfbb8_2
- prompt-toolkit=3.0.8=pyha770c72_0
- prompt_toolkit=3.0.8=hd8ed1ab_0
- protobuf=3.13.0.1=py37hdadc0f0_1
- psutil=5.7.3=py37h395d20d_0
- ptyprocess=0.6.0=py_1001
- py-opencv=4.5.0=py37he01cfaa_3
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.7.2=py_0
- pygpu=0.7.6=py37h57c32b8_1002
- pyopenssl=19.1.0=py_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py37h25ebb8a_4
- pyrsistent=0.17.3=py37h4b544eb_1
- pysocks=1.7.1=py37h2987424_2
- python=3.7.8=hc9dea61_1_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.7=1_cp37m
- pytorch=1.4.0=py3.7_0
- pytz=2020.4=pyhd8ed1ab_0
- pywavelets=1.1.1=py37h57c32b8_3
- pyyaml=5.3.1=py37h395d20d_1
- pyzmq=20.0.0=py37h47fd9b3_1
- qt=5.12.9=h717870c_0
- qtconsole=4.7.7=pyh9f0ad1d_0
- qtpy=1.9.0=py_0
- r-askpass=1.1=r40h17f1fa6_2
- r-backports=1.2.0=r40h6b199c2_0
- r-base=4.0.3=h90464e4_2
- r-bh=1.72.0_3=r40h6115d3f_1
- r-bit=4.0.4=r40h800e0f2_0
- r-bit64=4.0.5=r40h800e0f2_0
- r-bitops=1.0_6=r40h17f1fa6_1004
- r-blob=1.2.1=r40h6115d3f_1
- r-catools=1.18.0=r40hc5da6b9_1
- r-class=7.3_17=r40h17f1fa6_1
- r-curl=4.3=r40h17f1fa6_1
- r-dbi=1.1.0=r40h6115d3f_1
- r-digest=0.6.27=r40h342fd00_0
- r-e1071=1.7_4=r40h342fd00_0
- r-ellipsis=0.3.1=r40h17f1fa6_0
- r-formatr=1.7=r40h6115d3f_2
- r-futile.logger=1.4.3=r40h6115d3f_1003
- r-futile.options=1.0.1=r40h6115d3f_1002
- r-gdata=2.18.0=r40h6115d3f_1003
- r-glue=1.4.2=r40h800e0f2_0
- r-gplots=3.1.0=r40h6115d3f_0
- r-gtools=3.8.2=r40h17f1fa6_1
- r-httr=1.4.2=r40h6115d3f_0
- r-jsonlite=1.7.1=r40h800e0f2_0
- r-kernsmooth=2.23_18=r40h528b35d_0
- r-lambda.r=1.2.4=r40h6115d3f_1
- r-lattice=0.20_41=r40h17f1fa6_2
- r-locfit=1.5_9.4=r40h17f1fa6_1
- r-mass=7.3_53=r40h800e0f2_0
- r-matrix=1.2_18=r40h26f5615_3
- r-matrixstats=0.57.0=r40h800e0f2_0
- r-memoise=1.1.0=r40h6115d3f_1004
- r-mgcv=1.8_33=r40hb6d66fe_0
- r-mime=0.9=r40h17f1fa6_1
- r-nlme=3.1_150=r40ha752707_0
- r-openssl=1.4.3=r40ha713f70_0
- r-pkgconfig=2.0.3=r40h6115d3f_1
- r-plogr=0.2.0=r40h6115d3f_1003
- r-r6=2.5.0=r40hc72bb7e_0
- r-rcpp=1.0.5=r40h1dba97f_0
- r-rlang=0.4.8=r40h6b199c2_0
- r-rsqlite=2.2.1=r40h342fd00_0
- r-snow=0.4_3=r40h6115d3f_1002
- r-survival=3.2_7=r40h800e0f2_0
- r-sys=3.4=r40h800e0f2_0
- r-vctrs=0.3.4=r40h800e0f2_0
- r-xml=3.99_0.3=r40h17f1fa6_1
- r-xtable=1.8_4=r40h6115d3f_3
- r-zeallot=0.1.0=r40h6115d3f_1002
- readline=8.0=h0678c8f_2
- requests=2.25.0=pyhd3deb0d_0
- scikit-image=0.17.2=py37h9b0e0a3_4
- scikit-learn=0.23.2=py37hd891755_2
- scipy=1.5.3=py37h04d6967_0
- seaborn=0.11.0=h694c41f_1
- seaborn-base=0.11.0=pyhd8ed1ab_1
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py37h2987424_2
- six=1.15.0=pyh9f0ad1d_0
- snappy=1.1.8=hb1e8313_3
- sqlite=3.33.0=h960bd1c_1
- statsmodels=0.12.1=py37h7ff7679_1
- tapi=1000.10.8=h879752b_4
- tensorboard=1.14.0=py37_0
- tensorflow=1.14.0=h3cdfc77_0
- tensorflow-base=1.14.0=py37hc8dfbb8_0
- tensorflow-datasets=1.2.0=py_0
- tensorflow-estimator=1.14.0=py37h5ca1d4c_0
- tensorflow-gan=2.0.0=py_0
- tensorflow-hub=0.9.0=pyh831f99a_0
- tensorflow-metadata=0.14.0=pyhe6710b0_1
- tensorflow-probability=0.8.0=py_0
- termcolor=1.1.0=py_2
- terminado=0.9.1=py37hf985489_1
- testpath=0.4.4=py_0
- theano=1.0.5=py37he8cc110_1
- threadpoolctl=2.1.0=pyh5ca1d4c_0
- tifffile=2020.10.1=py_0
- tk=8.6.10=hb0a8c7a_1
- tktable=2.10=h49f0cf7_3
- toolz=0.11.1=py_0
- torchaudio=0.4.0=py37
- torchvision=0.5.0=py37_cpu
- tornado=6.1=py37h4b544eb_0
- tqdm=4.51.0=pyh9f0ad1d_0
- traitlets=5.0.5=py_0
- typing=3.7.4.3=py37hc8dfbb8_1
- urllib3=1.25.11=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- werkzeug=1.0.1=pyh9f0ad1d_0
- wheel=0.35.1=pyh9f0ad1d_0
- widgetsnbextension=3.5.1=py37hf985489_4
- wrapt=1.12.1=py37h9bfed18_1
- x264=1!152.20180806=h1de35cc_0
- xz=5.2.5=haf1e3a3_1
- yaml=0.2.5=haf1e3a3_0
- zeromq=4.3.3=h2e338ed_2
- zfp=0.5.5=hb1e8313_4
- zipp=3.4.0=py_0
- zlib=1.2.11=h7795811_1010
- zstd=1.4.5=h289c70a_2
- pip:
- pyqt5-sip==4.19.18
- pyqtchart==5.12
- pyqtwebengine==5.12.1