SBOL 2 to 3 Converter

[PrashantVaidyanathan]

This is a space for the community to discuss and/or ask questions about the SBOL 2 - SBOL 3 converter

[Yehuda-Binik]

Felipe and I were discussing dependency order for the various object converters that still need to be implemented. We have decided that the highest priority at the moment is

1. visit_component()
2. visit_sequence_annotation()

After that, we have not made any decisions in regard to the order we will implement features in.

The plan right now is for me to finish testing visit_component() using the document that Felipe wrote up for me as the basis of a unit test. Meanwhile, Felipe will begin working on visit_sequence_annotation(). Once I finish visit_component(), Felipe can really get started on visit_sequence_annotation(), and we can go from there.

[fxbuson]

Here is the unit test file attached and the code that generated it:

import sbol2

doc2 = sbol2.Document()

comp = sbol2.ComponentDefinition("comp_1")
comp2 = sbol2.ComponentDefinition("comp_2")
comp3 = sbol2.ComponentDefinition("comp_3")

doc2.add(comp)
doc2.add(comp2)
doc2.add(comp3)

sub_comp = sbol2.Component("sub_comp_1")
sub_comp.definition = comp2.identity

sub_comp2 = sbol2.Component("sub_comp_2", access=sbol2.SBOL_ACCESS_PRIVATE)
sub_comp2.definition = comp3.identity

comp.components = [sub_comp, sub_comp2]

doc2.write("component_test_1.xml")

component_test_1.zip