-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy path20200611_data_club.tex
177 lines (166 loc) · 5.38 KB
/
20200611_data_club.tex
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
%% Ankur Sinha
%% packages %%
% support for coloured text
\usepackage{color}
% IPA
\usepackage{tipa}
\usepackage[scale=2]{ccicons}
\usepackage{amssymb}
\usepackage{tikz}
\usetikzlibrary{mindmap, arrows.meta, positioning, arrows}
\usepackage{pgfplots}
% Define the colours we use for E and I in all graphs
\definecolor{SinhaBlueE}{HTML}{3b4cc0}
\definecolor{SinhaRedI}{HTML}{f7a789}
\pgfmathdeclarefunction{gaussnew}{4}{%nu, eta, eps, omega
\pgfmathparse{(#1*((2*exp(-(((x-((#2+#3)/2))/((#2-#3)/(2*sqrt(-ln(#4/2)))))^2))) -#4))}%chktex 36
}
\usepackage{jneurosci}
\usepackage{subcaption}
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}
\usepackage[style=nature,backend=biber,autocite=footnote]{biblatex}
% \addbibresource{/home/asinha/Documents/01_Readables/00_research_papers/bibliography/masterbib.bib}
% \renewcommand*{\bibfont}{\tiny}
% Use opensans
% \usepackage[default,scale=0.95]{opensans}
\usepackage[sfdefault]{roboto}
% for strike through
\usepackage[normalem]{ulem}
% links, urls, refs
\definecolor{links}{HTML}{2A1B81}
% Fedora blue for the theme
\definecolor{FedoraBlue}{HTML}{2A1B81}
\usepackage{hyperref}
\hypersetup{colorlinks,linkcolor=Green,urlcolor=links}
% graphics
\usepackage{graphicx}
% algorithm
\usepackage{algorithmic}
\usepackage{textcomp}
\usepackage{wrapfig}
\usepackage{textgreek}
\usepackage{euler}
\usepackage{csquotes}
\usepackage{tabularx}
\usepackage{booktabs}
% beamer theme
% use defaults for theme
\usetheme[numbering=fraction]{metropolis}
\usefonttheme[onlymath]{serif}
\setbeamerfont{footnote}{size=\tiny}
\setbeamerfont{caption}{size=\tiny}
\setbeamercolor{alerted text}{fg=Green}
\setbeamerfont{note page}{size=\small}
% Not needed in metropolis, but in general footnote citation fixes: https://tex.stackexchange.com/questions/44217/how-can-i-stop-footcite-from-hijacking-my-beamer-columns
% how to use multiple references to the same footnote: https://tex.stackexchange.com/questions/27763/beamer-multiple-references-to-the-same-footnote
% Disable footnoterule
\renewcommand{\footnoterule}{}
%% title %%
\title{Data club: OSB updates}
\subtitle{\enquote{Show and tell}}
\author[Ankur Sinha]{Ankur Sinha}
\date{11/06/2020}
%% document begins %%
\begin{document}
% title frame %%
\begin{frame}
\titlepage{}
\end{frame}
%% Three slides for 5 minutes seems good
%% So, 30 slides at most for 50 minutes
\begin{frame}[c]
\frametitle{OSBv1}
Demo: \url{www.opensourcebrain.org}
\note{Mostly showing various bits, not too many slides needed.}
\end{frame}
\begin{frame}[c]
\frametitle{OSBv1: current status}
\begin{itemize}
\item Maintenance mode: small bug fixes, minor enhancements:
\begin{itemize}
\item \href{app.zenhub.com}{Ankur's Kanban board (public)}.
\end{itemize}
\pause{}
\item Consolidation of infrastructure on Google Cloud Services:
\begin{itemize}
\item kubernetes (k8s):
\begin{itemize}
\item also container based but,
\item better fine grained control of computing resources.
\end{itemize}
\item Continuous Deployment (CD) pipeline:
\begin{itemize}
\item GitHub \(\rightarrow{}\) CodeFresh \(\rightarrow{}\) Google cloud \(\rightarrow{}\) live!
\end{itemize}
\pause{}
\item MetaCell:
\begin{itemize}
\item CloudHarness: cloud infrastructure manager.
\end{itemize}
\item Test OSBv1 deployment: \url{beta.opensourcebrain.org}.
\end{itemize}
\end{itemize}
\end{frame}
\begin{frame}[c]
\frametitle{OSBv1: future plans}
Maintain until OSBv2 reaches feature parity.
\end{frame}
\begin{frame}[c]
\frametitle{OSBv2: the idea: closing the loop}
\begin{itemize}
\item Modelling:
\begin{itemize}
\item NetPyNE:\ Simulation and analysis.
\end{itemize}
\item Experiments:
\begin{itemize}
\item NWBExplorer.
\end{itemize}
\pause{}
\item Workspaces:
\begin{itemize}
\item both in one place,
\item sharing and collaboration.
\end{itemize}
\end{itemize}
\end{frame}
\begin{frame}[c]
\frametitle{NWBExplorer revisited}
\url{http://nwbexplorer.opensourcebrain.org/}
\end{frame}
\begin{frame}[c]
\frametitle{NetPyNE UI}
\url{http://34.68.113.100/}
\end{frame}
\begin{frame}[c]
\frametitle{OSBv2: preview}
\url{http://www.v2.opensourcebrain.org/}
\end{frame}
\begin{frame}[c]
\frametitle{OSBv2: what to expect: design mockups}
\url{https://www.figma.com} (evolving, not public)
\end{frame}
\begin{frame}[c]
\frametitle{OSBv2: progress and plans}
\begin{itemize}
\item Short term (this year):
\begin{itemize}
\item \href{https://app.zenhub.com/workspaces/open-source-brain-5c4f23e44c15c80eadb6c30d/board}{MetaCell's Kanban Board (public)},
\item Outreach: early adopters, tweaks as per use cases,
\item OSBv1 sunset: when OSBv2 is ready enough,
\end{itemize}
\pause{}
\item Long term (3--5 years: feature complete OSBv2):
\begin{itemize}
\item \href{https://airtable.com}{MetaCell: user stories (airtable.com, not public)}.
\end{itemize}
\pause{}
\item Long long term:
\begin{itemize}
\item Maintenance: user support, bug fixes, security updates, infrastructure updates,
\item No end to integrations with new data sources, repositories.
\end{itemize}
\end{itemize}
\end{frame}
\end{document}