NAMESPACE

# Generated by roxygen2: do not edit by hand

export("%>%")
export(deploy)
export(fCNA)
export(gcap.ASCNworkflow)
export(gcap.collapse2Genes)
export(gcap.extractFeatures)
export(gcap.runASCAT)
export(gcap.runASCNBuildflow)
export(gcap.runBuildflow)
export(gcap.runPrediction)
export(gcap.runScoring)
export(gcap.workflow)
export(gcap.workflow.facets)
export(gcap.workflow.seqz)
export(get_auc)
export(mergeDTs)
export(overlaps)
import(R6)
import(cli)
import(data.table)
import(glue)
import(lgr)
import(quadprog)
import(rappdirs)
import(uuid)
import(xgboost)
importFrom(ASCAT,ascat.GCcorrect)
importFrom(ASCAT,ascat.aspcf)
importFrom(ASCAT,ascat.loadData)
importFrom(ASCAT,ascat.plotRawData)
importFrom(ASCAT,ascat.plotSegmentedData)
importFrom(ASCAT,ascat.predictGermlineGenotypes)
importFrom(ASCAT,ascat.prepareHTS)
importFrom(ASCAT,ascat.runAscat)
importFrom(GetoptLong,qq)
importFrom(Rcpp,sourceCpp)
importFrom(data.table,":=")
importFrom(data.table,.BY)
importFrom(data.table,.EACHI)
importFrom(data.table,.GRP)
importFrom(data.table,.I)
importFrom(data.table,.N)
importFrom(data.table,.NGRP)
importFrom(data.table,.SD)
importFrom(data.table,data.table)
importFrom(grDevices,dev.list)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(magrittr,"%>%")
importFrom(sigminer,get_Aneuploidy_score)
importFrom(sigminer,get_cn_ploidy)
importFrom(sigminer,get_intersect_size)
importFrom(sigminer,get_pLOH_score)
importFrom(sigminer,read_copynumber)
importFrom(sigminer,read_copynumber_ascat)
importFrom(sigminer,sig_fit)
importFrom(sigminer,sig_tally)
importFrom(stats,predict)
importFrom(utils,packageVersion)
useDynLib(gcap, .registration = TRUE)