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CHANGELOG.md

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Change Log

This project adheres to Semantic Versioning.

v0.1.5b (2022-09-11)

Added

  • Unit tests for RINKO module
  • Added API entries for modules and functions with missing descriptions
  • Implemented new style of flagging file for all CTO discrete analyses
  • Began consolidation of settings and configuations into a single file
  • Additional method for soak detection in cast_tools
  • Added support for SeaBird turbidity and CDOM fluorometers
  • Added numerous warnings in case of discrete file abnormalities
  • Support to merge multiple .hy1 bottle files
  • Param-vs-param and TS plots

Changed

  • Functionality and depreciation update for Python 3.11 (previously 3.8/3.9)
  • Updated CodeCOV functionality to no longer error out
  • Adjusted a number of pytest unit tests
  • Fixed bugs in oxygen fitting
  • Improved the QC tool

Removed

  • Numerous TODO markers, itemizing into Github issues
  • Scratch folder

v0.1.4b (2022-11-23)

Added

  • Logging messages of all levels are now logged to ctdcal.log file
  • ctdcal CLI now has a --debug flag to display all logging levels (instead of WARNING and above)
  • ctdcal.io has two new functions for reading Exchange data files from local filesystem or URL, load_exchange_btl and load_exchange_ctd (see CCHDO File Formats)
  • Tutorial notebooks on how to use ctdcal can be found in the docs
  • ctdcal quick-convert CLI command to create Exchange ct1 files from Sea-Bird .cnv files, without performing any calibration
  • ctdcal qc CLI command to launch interactive data flagging tool
  • Data flagging tool now has an exit button to halt the local server process
  • Added Wetlabs Fluorometer to convert.py
  • Start testing process_bottle and oxy_fitting modules

Changed

  • By default, only logging levels WARNING and above will be displayed in terminal (see --debug addition above)
  • Fixed bug when loading single station ssscc.csv files into fit_ctd

v0.1.3b (2021-10-21)

Added

  • Created ctdcal.io module to hold all non-ODF-specific reading/writing functions
  • isort pre-commit hook
  • Set up Codecov
  • equations_sbe conversion functions will now return a list of missing coefficients (instead of first missing in equation)
  • equations_sbe now NaNs out zero-values in all input frequency arrays (applies to sbe3, sbe4, and sbe9 conversions)

Changed

  • Renamed master branch to main
  • Fix sphinx/RTD version bug by importing ctdcal._version instead of importlib.metadata.version("ctdcal")
  • Fix GitHub Action run-tests bug which triggered twice when pushing tagged commits
  • ctd_plots functions now return axis handle if filename is not given
  • _intermediate_residual_plot() is now wrapped around residual_vs_pressure() instead of being a duplicate function
  • report_ctd merged into new ctdcal.io module

Removed

  • cmocean is no longer a package dependency
  • Remove hardcoded cruise report plot code from ctd_plots module in favor of ctdcal/scripts/cruise_report.py
  • Outdated code in top-level old folder has been removed in favor of SBEReader class and equations_sbe module
  • Outdated merge_codes module has been removed

v0.1.2b (2021-09-29)

Added

  • Initialize testing framework using pytest
  • Add testing for fit_ctd and flagging modules
  • Run tests on multiple OS and Python version using GitHub Actions
  • More status badges

Removed

  • Deleted outdated unitTest.sh testing file

v0.1.1b (2021-09-23)

Added

  • Basic guide to making package releases
  • GitHub Action which publishes tagged versions to TestPyPI

Changed

  • Fixed configuration loader bug by including user_settings.yaml in packaged files
  • Update installation steps to use pip instead of git clone
  • Added pip install ctdcal step to publish-to-pypi workflow

v0.1.0b (2021-09-23)

Added

  • Github Action which publishes released versions to PyPI

Changed

  • Switch from using versioneer to setuptools_scm

Removed

  • Deleted .flake8 settings file in lieu of setup.cfg

v0.1.0a (2021-09-22)

Added

  • Example Jupyter notebook functionality in documentation
  • Generate stub pages for all functions/classes/etc.

Changed

  • Improved ReadTheDocs documentation