From f27065c661014c7af7f4c4abd209352b8b168334 Mon Sep 17 00:00:00 2001
From: semantic-release-bot <semantic-release-bot@martynus.net>
Date: Fri, 22 Sep 2023 15:07:04 -0700
Subject: [PATCH] chore(release): 2.8.0

## [2.8.0](https://github.com/PharmGKB/PharmCAT/compare/v2.7.1...v2.8.0) (2023-09-22)

### Features

* **pharmcat:** update DPYD matcher algorithm ([763b950](https://github.com/PharmGKB/PharmCAT/commit/763b950a34f6227eaf759135cbfeec4cd8ea36f5)), closes [#150](https://github.com/PharmGKB/PharmCAT/issues/150)

### Bug Fixes

* **pharmcat:** allow reporter JSON in research mode ([a3b0496](https://github.com/PharmGKB/PharmCAT/commit/a3b04963017e0e99ac3851bd666bdf70513d1262))
* **pharmcat:** avoid NPE ([a86daa6](https://github.com/PharmGKB/PharmCAT/commit/a86daa61e765bb158e7996c0d250bcb1ac7d7304))
* **pharmcat:** avoid NPE ([da11bd6](https://github.com/PharmGKB/PharmCAT/commit/da11bd6556298b109e17543faf00f378cc0b6444))
* **pharmcat:** fix console message ([f2b4086](https://github.com/PharmGKB/PharmCAT/commit/f2b4086b6bfcee20f88874b7c8fea59fc782b8d9))
* **pharmcat:** fix how warnings are handled with outside calls ([634f3b4](https://github.com/PharmGKB/PharmCAT/commit/634f3b4231dd05e1b6cf43eda035ebe7a74afb24)), closes [#154](https://github.com/PharmGKB/PharmCAT/issues/154)
* **phenotyper:** pass through outside calls even if no recommendations are available ([03f7f7c](https://github.com/PharmGKB/PharmCAT/commit/03f7f7cb6f97dab9726f7dc4b180ceb45844fa75)), closes [#154](https://github.com/PharmGKB/PharmCAT/issues/154)
* **reporter:** add DPYD warnings ([2427813](https://github.com/PharmGKB/PharmCAT/commit/24278138e706faa7e749d87debf80b016a4a7683))
---
 CHANGELOG.md                        | 18 ++++++++++++++++++
 docs/index.md                       |  2 +-
 package.json                        |  2 +-
 preprocessor/preprocessor/common.py |  2 +-
 4 files changed, 21 insertions(+), 3 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7bfa13c95..ee3c21442 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,21 @@
+## [2.8.0](https://github.com/PharmGKB/PharmCAT/compare/v2.7.1...v2.8.0) (2023-09-22)
+
+
+### Features
+
+* **pharmcat:** update DPYD matcher algorithm ([763b950](https://github.com/PharmGKB/PharmCAT/commit/763b950a34f6227eaf759135cbfeec4cd8ea36f5)), closes [#150](https://github.com/PharmGKB/PharmCAT/issues/150)
+
+
+### Bug Fixes
+
+* **pharmcat:** allow reporter JSON in research mode ([a3b0496](https://github.com/PharmGKB/PharmCAT/commit/a3b04963017e0e99ac3851bd666bdf70513d1262))
+* **pharmcat:** avoid NPE ([a86daa6](https://github.com/PharmGKB/PharmCAT/commit/a86daa61e765bb158e7996c0d250bcb1ac7d7304))
+* **pharmcat:** avoid NPE ([da11bd6](https://github.com/PharmGKB/PharmCAT/commit/da11bd6556298b109e17543faf00f378cc0b6444))
+* **pharmcat:** fix console message ([f2b4086](https://github.com/PharmGKB/PharmCAT/commit/f2b4086b6bfcee20f88874b7c8fea59fc782b8d9))
+* **pharmcat:** fix how warnings are handled with outside calls ([634f3b4](https://github.com/PharmGKB/PharmCAT/commit/634f3b4231dd05e1b6cf43eda035ebe7a74afb24)), closes [#154](https://github.com/PharmGKB/PharmCAT/issues/154)
+* **phenotyper:** pass through outside calls even if no recommendations are available ([03f7f7c](https://github.com/PharmGKB/PharmCAT/commit/03f7f7cb6f97dab9726f7dc4b180ceb45844fa75)), closes [#154](https://github.com/PharmGKB/PharmCAT/issues/154)
+* **reporter:** add DPYD warnings ([2427813](https://github.com/PharmGKB/PharmCAT/commit/24278138e706faa7e749d87debf80b016a4a7683))
+
 ## [2.7.1](https://github.com/PharmGKB/PharmCAT/compare/v2.7.0...v2.7.1) (2023-09-09)
 
 
diff --git a/docs/index.md b/docs/index.md
index e2446c271..666688609 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -3,7 +3,7 @@ title: Home
 permalink: /
 nav_order: 1
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-pharmcat_version: 2.7.1
+pharmcat_version: 2.8.0
 ---
 
 # PharmCAT:<br />Pharmacogenomics Clinical Annotation Tool
diff --git a/package.json b/package.json
index dd132682f..125202e3b 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "pharmcat",
-  "version": "2.7.1",
+  "version": "2.8.0",
   "repository": {
     "type": "git",
     "url": "https://github.com/PharmGKB/PharmCAT.git"
diff --git a/preprocessor/preprocessor/common.py b/preprocessor/preprocessor/common.py
index 108d3b9f3..9caa15df2 100644
--- a/preprocessor/preprocessor/common.py
+++ b/preprocessor/preprocessor/common.py
@@ -2,7 +2,7 @@
 
 
 # version is dynamically updated - DO NOT MODIFY MANUALLY
-PHARMCAT_VERSION = '2.7.1'
+PHARMCAT_VERSION = '2.8.0'
 
 # expected tool versions
 MIN_BCFTOOLS_VERSION = '1.18'