coderdata.json

{
    "@context": {
        "@language": "en",
        "@vocab": "https://schema.org/",
        "citeAs": "cr:citeAs",
        "column": "cr:column",
        "conformsTo": "dct:conformsTo",
        "containedIn": "cr:containedIn",
        "description": "cr:description",
        "cr": "http://mlcommons.org/croissant/",
        "rai": "http://mlcommons.org/croissant/RAI/",
        "data": {
            "@id": "cr:data",
            "@type": "@json"
        },
        "dataType": {
            "@id": "cr:dataType",
            "@type": "@vocab"
        },
        "dct": "http://purl.org/dc/terms/",
        "examples": {
            "@id": "cr:examples",
            "@type": "@json"
        },
        "extract": "cr:extract",
        "field": "cr:field",
        "fileProperty": "cr:fileProperty",
        "fileObject": "cr:FileObject",
        "fileSet": "cr:FileSet",
        "includes": "cr:includes",
        "isLiveDataset": "cr:isLiveDataset",
        "jsonPath": "cr:jsonPath",
        "key": "cr:key",
        "md5": "cr:md5",
        "format": "cr:format",
        "ml": "http://mlcommons.org/schema/",
        "parentField": "cr:parentField",
        "path": "cr:path",
        "recordSet": "cr:recordSet",
        "references": "cr:references",
        "regex": "cr:regex",
        "repeated": "cr:repeated",
        "replace": "cr:replace",
        "sc": "https://schema.org/",
        "separator": "cr:separator",
        "source": "cr:source",
        "subField": "cr:subField",
        "transform": "cr:transform"
    },
    "@type": "sc:Dataset",
    "name": "coderdata",
    "conformsTo": "http://mlcommons.org/croissant/1.0/",
    "description": "CoderData is a benchmark dataset designed for AI/ML modeling of drug sensitivity via omics measurements.",
    "citeAs": "@Article{jac24, author = \"Jeremy Jacobson, Chang In Moon, Sydney Schwartz, Belinda Garana, Ryan Weil, and Sara Gosline}\"",
    "license": "BSD-3",
    "url": "https://pnnl-compbio.github.io/coderdata/",
    "distribution": [
        {
            "@type": "cr:FileObject",
            "@id": "coderdata-zip",
            "contentUrl": "https://figshare.com/ndownloader/articles/25935544/versions/1",
            "encodingFormat": "application/zip",
            "md5": "fb38383c09f2a212ed9f3b695012c757"
        },
        {
            "@type": "cr:FileObject",
            "@id": "Gene",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "contentUrl": "./genes.csv",
            "description": "Gene identifier file",
            "encodingFormat": "text/csv",
            "sha256": ""
        },
        {
            "@type": "cr:FileSet",
            "@id": "Sample",
            "description": "Sample identifier files for each dataset",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/csv",
            "includes": "*samples.csv"
        },
        {
            "@type": "cr:FileSet",
            "@id": "Drug",
            "description": "Drug identifiers and SMILES string",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/tsv",
            "includes": "*drugs.tsv"
        },
        {
            "@type": "cr:FileSet",
            "@id": "Transcriptomics",
            "description": "Transcriptomics files",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/csv",
            "includes": "*transcriptomics.csv.gz"
        },
        {
            "@type": "cr:FileSet",
            "@id": "Proteomics",
            "description": "Proteomics files",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/csv",
            "includes": "*proteomics.csv.gz"
        },
        {
            "@type": "cr:FileSet",
            "@id": "CopyNumber",
            "description": "Copy number datafiles",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/csv",
            "includes": "*copy_number.csv.gz"
        },
        {
            "@type": "cr:FileSet",
            "@id": "Mutations",
            "description": "Mutation files",
            "containedIn": {
                "@id": "coderdata-zip"
            },
            "encodingFormat": "text/csv",
            "includes": "*mutations.csv.gz"
        }
    ],
    "recordSet": [
        {
            "@type": "cr:RecordSet",
            "@id": "Gene",
            "key": [
                {
                    "@id": "Gene/entrez_id"
                },
                {
                    "@id": "Gene/other_id"
                },
                {
                    "@id": "Gene/other_id_source"
                },
                {
                    "@id": "Gene/gene_symbol"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Gene/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileObject": {
                            "@id": "Gene"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Gene/other_id",
                    "description": "other identifier",
                    "dataType": "sc:Text",
                    "source": {
                        "fileObject": {
                            "@id": "Gene"
                        },
                        "extract": {
                            "column": "other_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Gene/other_id_source",
                    "description": "source of other identifier",
                    "dataType": "sc:Text",
                    "source": {
                        "fileObject": {
                            "@id": "Gene"
                        },
                        "extract": {
                            "column": "other_id_source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Gene/gene_symbol",
                    "description": "HGNC Gene symbol or synomym",
                    "dataType": "sc:Text",
                    "source": {
                        "fileObject": {
                            "@id": "Gene"
                        },
                        "extract": {
                            "column": "gene_symbol"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Sample",
            "key": [
                {
                    "@id": "Sample/improve_sample_id"
                },
                {
                    "@id": "Sample/other_id"
                },
                {
                    "@id": "Sample/other_id_source"
                },
                {
                    "@id": "Sample/common_name"
                },
                {
                    "@id": "Sample/cancer_type"
                },
                {
                    "@id": "Sample/other_names"
                },
                {
                    "@id": "Sample/species"
                },
                {
                    "@id": "Sample/model_type"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Sample/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/other_id",
                    "description": "other identifier",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "other_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/other_id_source",
                    "description": "source of other identifier",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "other_id_source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/common_name",
                    "description": "name for drug",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "common_name"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/cancer_type",
                    "description": "Type of cancer",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "cancer_type"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/other_names",
                    "description": "Other name for sample",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "other_names"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/species",
                    "description": "Species",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "species"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Sample/model_type",
                    "description": "Type of model, must be confined to our existing set of definitions",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Sample"
                        },
                        "extract": {
                            "column": "model_type"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Drug",
            "key": [
                {
                    "@id": "Drug/improve_drug_id"
                },
                {
                    "@id": "Drug/chem_name"
                },
                {
                    "@id": "Drug/canSMILES"
                },
                {
                    "@id": "Drug/isoSMILES"
                },
                {
                    "@id": "Drug/InChIKey"
                },
                {
                    "@id": "Drug/formula"
                },
                {
                    "@id": "Drug/weight"
                },
                {
                    "@id": "Drug/pubchem_id"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Drug/improve_drug_id",
                    "description": "Unique identifier for this dataset, one for each smile string.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "improve_drug_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/chem_name",
                    "description": "Name of drug",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "chem_name"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/canSMILES",
                    "description": "Canonical SMILE string",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "canSMILES"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/isoSMILES",
                    "description": "Isomeric SMILE string",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "isoSMILES"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/InChIKey",
                    "description": "InChIKey",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "InChIKey"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/formula",
                    "description": "Chemical formula",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "formula"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/weight",
                    "description": "Molecular weight",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "weight"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Drug/pubchem_id",
                    "description": "PubChem Identifier for this drug, can be many.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Drug"
                        },
                        "extract": {
                            "column": "pubchem_id"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "DrugDescriptor",
            "key": [
                {
                    "@id": "DrugDescriptor/improve_drug_id"
                },
                {
                    "@id": "DrugDescriptor/structural_descriptor"
                },
                {
                    "@id": "DrugDescriptor/descriptor_value"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "DrugDescriptor/improve_drug_id",
                    "description": "Unique identifier for this dataset, one for each smile string.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "DrugDescriptor"
                        },
                        "extract": {
                            "column": "improve_drug_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "DrugDescriptor/structural_descriptor",
                    "description": "string name describing structural descriptor",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "DrugDescriptor"
                        },
                        "extract": {
                            "column": "structural_descriptor"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "DrugDescriptor/descriptor_value",
                    "description": "value representing descriptor value",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "DrugDescriptor"
                        },
                        "extract": {
                            "column": "descriptor_value"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Transcriptomics",
            "key": [
                {
                    "@id": "Transcriptomics/entrez_id"
                },
                {
                    "@id": "Transcriptomics/improve_sample_id"
                },
                {
                    "@id": "Transcriptomics/source"
                },
                {
                    "@id": "Transcriptomics/study"
                },
                {
                    "@id": "Transcriptomics/transcriptomics"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Transcriptomics/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Transcriptomics"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Transcriptomics/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Transcriptomics"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Transcriptomics/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Transcriptomics"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Transcriptomics/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Transcriptomics"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Transcriptomics/transcriptomics",
                    "description": "Transcripts per million of sample at baseline.",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Transcriptomics"
                        },
                        "extract": {
                            "column": "transcriptomics"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Proteomics",
            "key": [
                {
                    "@id": "Proteomics/entrez_id"
                },
                {
                    "@id": "Proteomics/improve_sample_id"
                },
                {
                    "@id": "Proteomics/source"
                },
                {
                    "@id": "Proteomics/study"
                },
                {
                    "@id": "Proteomics/proteomics"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Proteomics/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Proteomics"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Proteomics/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Proteomics"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Proteomics/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Proteomics"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Proteomics/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Proteomics"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Proteomics/proteomics",
                    "description": "Log-normalized log ratio of proteomics measurements of sample at baseline.",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Proteomics"
                        },
                        "extract": {
                            "column": "proteomics"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "CopyNumber",
            "key": [
                {
                    "@id": "CopyNumber/entrez_id"
                },
                {
                    "@id": "CopyNumber/improve_sample_id"
                },
                {
                    "@id": "CopyNumber/source"
                },
                {
                    "@id": "CopyNumber/study"
                },
                {
                    "@id": "CopyNumber/copy_number"
                },
                {
                    "@id": "CopyNumber/copy_call"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/copy_number",
                    "description": "Copy number measurements of sample at baseline",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "copy_number"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "CopyNumber/copy_call",
                    "description": "Categorical variable defining copy number measurement.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "CopyNumber"
                        },
                        "extract": {
                            "column": "copy_call"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Mutations",
            "key": [
                {
                    "@id": "Mutations/entrez_id"
                },
                {
                    "@id": "Mutations/improve_sample_id"
                },
                {
                    "@id": "Mutations/source"
                },
                {
                    "@id": "Mutations/study"
                },
                {
                    "@id": "Mutations/mutation"
                },
                {
                    "@id": "Mutations/variant_classification"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/mutation",
                    "description": "Description of the mutation, when available.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "mutation"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Mutations/variant_classification",
                    "description": "Classification of the variant",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Mutations"
                        },
                        "extract": {
                            "column": "variant_classification"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Experiments",
            "key": [
                {
                    "@id": "Experiments/improve_drug_id"
                },
                {
                    "@id": "Experiments/improve_sample_id"
                },
                {
                    "@id": "Experiments/source"
                },
                {
                    "@id": "Experiments/study"
                },
                {
                    "@id": "Experiments/time"
                },
                {
                    "@id": "Experiments/time_unit"
                },
                {
                    "@id": "Experiments/dose_response_metric"
                },
                {
                    "@id": "Experiments/dose_response_value"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/improve_drug_id",
                    "description": "Unique identifier for this dataset, one for each smile string.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "improve_drug_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/time",
                    "description": "Time at which measurement was administered, unit below.",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "time"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/time_unit",
                    "description": "Unit of time in which drug treatment was measured, e.g. minutes, hours, weeks.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "time_unit"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/dose_response_metric",
                    "description": "Metric by which dose response value is measured",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "dose_response_metric"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Experiments/dose_response_value",
                    "description": "Value of metric",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Experiments"
                        },
                        "extract": {
                            "column": "dose_response_value"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Perturbations",
            "key": [
                {
                    "@id": "Perturbations/entrez_id"
                },
                {
                    "@id": "Perturbations/improve_sample_id"
                },
                {
                    "@id": "Perturbations/time"
                },
                {
                    "@id": "Perturbations/time_unit"
                },
                {
                    "@id": "Perturbations/source"
                },
                {
                    "@id": "Perturbations/study"
                },
                {
                    "@id": "Perturbations/data_value"
                },
                {
                    "@id": "Perturbations/data_type"
                },
                {
                    "@id": "Perturbations/perturbation"
                },
                {
                    "@id": "Perturbations/perturbation_type"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/entrez_id",
                    "description": "Gene id according to NCBI",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "entrez_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/time",
                    "description": "Time at which measurement was administered, unit below.",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "time"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/time_unit",
                    "description": "Unit of time in which drug treatment was measured, e.g. minutes, hours, weeks.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "time_unit"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/data_value",
                    "description": "Response value of the gene",
                    "dataType": "sc:Float",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "data_value"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/data_type",
                    "description": "The value represented in the data value",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "data_type"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/perturbation",
                    "description": "Drug or gene id that was perturbed",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "perturbation"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Perturbations/perturbation_type",
                    "description": "The perturbagen that was used",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Perturbations"
                        },
                        "extract": {
                            "column": "perturbation_type"
                        }
                    }
                }
            ]
        },
        {
            "@type": "cr:RecordSet",
            "@id": "Combinations",
            "key": [
                {
                    "@id": "Combinations/improve_sample_id"
                },
                {
                    "@id": "Combinations/source"
                },
                {
                    "@id": "Combinations/study"
                },
                {
                    "@id": "Combinations/drug_one_id"
                },
                {
                    "@id": "Combinations/drug_two_id"
                },
                {
                    "@id": "Combinations/combination_metric"
                },
                {
                    "@id": "Combinations/combination_value"
                }
            ],
            "field": [
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/improve_sample_id",
                    "description": "Unique sample identifier for this dataset, generated by this package",
                    "dataType": "sc:Integer",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "improve_sample_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/source",
                    "description": "Source of data generated.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "source"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/study",
                    "description": "Study informatiom identifying where/when data was collected.",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "study"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/drug_one_id",
                    "description": "improve_drug_id of first drug",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "drug_one_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/drug_two_id",
                    "description": "imrrove_drug_id of second drug",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "drug_two_id"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/combination_metric",
                    "description": "metric calculated for synergy, or other metric of two drugs",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "combination_metric"
                        }
                    }
                },
                {
                    "@type": "cr:Field",
                    "@id": "Combinations/combination_value",
                    "description": "value of metric for synergy or combination",
                    "dataType": "sc:Text",
                    "source": {
                        "fileSet": {
                            "@id": "Combinations"
                        },
                        "extract": {
                            "column": "combination_value"
                        }
                    }
                }
            ]
        }
    ]
}