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Line colours in legend don't match line colours in plot #95

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stellaprins opened this issue Nov 27, 2024 · 3 comments
Open
1 of 2 tasks

Line colours in legend don't match line colours in plot #95

stellaprins opened this issue Nov 27, 2024 · 3 comments

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@stellaprins
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stellaprins commented Nov 27, 2024

  • run natively
  • AttributeError: 'bool' object has no attribute 'isdigit' could have to do with the python version? get environment from docker container and try to replicate natively
@stellaprins
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stellaprins commented Dec 9, 2024

Unable to run test_telllurium.py script on

BIOMD0000001077
BIOMD0000000724

Error: AttributeError: 'bool' object has no attribute 'isdigit'

BIOMD0000000001 and BIOMD0000000138 are fine

@stellaprins
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@robertvi and myself did another troubleshoot session and found that most fails in the BioModels README table have this same error (Error: AttributeError: 'bool' object has no attribute 'isdigit').

So, the discrepancy between the tellurium remote and tellurium native columns in the number of passes, appears to be affected (mainly?) by this error.

We looked at the version of Tellurium I use natively, which matches the version used by BioSimulators (2.2.10)

We tried to validate the SED-ML and SBML files in the OMEX file using this tool but weren't able to make it work.

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stellaprins commented Dec 18, 2024

AttributeError: 'bool' object has no attribute 'isdigit' could have to do with the python version?

  • get environment from docker container and try to replicate natively

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