From 2ce325455787c8ca51d20d24cbeb499e241dc9b6 Mon Sep 17 00:00:00 2001 From: pgleeson Date: Wed, 27 Nov 2024 11:55:21 +0000 Subject: [PATCH] Test sbml/sedml --- LEMS_SimTestNet.xml | 2 +- SBML/BIOMD0000000138_url.sedml | 425 ++++++++++++++++++++++++++ SBML/BIOMD0000000138_url.xml | 539 +++++++++++++++++++++++++++++++++ 3 files changed, 965 insertions(+), 1 deletion(-) create mode 100644 SBML/BIOMD0000000138_url.sedml create mode 100644 SBML/BIOMD0000000138_url.xml diff --git a/LEMS_SimTestNet.xml b/LEMS_SimTestNet.xml index a85aea4..cb0f536 100644 --- a/LEMS_SimTestNet.xml +++ b/LEMS_SimTestNet.xml @@ -2,7 +2,7 @@ diff --git a/SBML/BIOMD0000000138_url.sedml b/SBML/BIOMD0000000138_url.sedml new file mode 100644 index 0000000..65f4014 --- /dev/null +++ b/SBML/BIOMD0000000138_url.sedml @@ -0,0 +1,425 @@ + + + + + + + + + + + + + + + + + auto_time_for_task1_var + + + + + + + + auto_dg_for_task1_c__x + + + + + + + + auto_dg_for_task1_vca__x + + + + + + + + auto_dg_for_task1_vk__x + + + + + + + + auto_dg_for_task1_Cm__x + + + + + + + + auto_dg_for_task1_gk__x + + + + + + + + auto_dg_for_task1_gcal__x + + + + + + + + auto_dg_for_task1_gsk__x + + + + + + + + auto_dg_for_task1_ga__x + + + + + + + + auto_dg_for_task1_gf__x + + + + + + + + auto_dg_for_task1_vn__x + + + + + + + + auto_dg_for_task1_va__x + + + + + + + + auto_dg_for_task1_vm__x + + + + + + + + auto_dg_for_task1_vh__x + + + + + + + + auto_dg_for_task1_vf__x + + + + + + + + auto_dg_for_task1_sn__x + + + + + + + + auto_dg_for_task1_sa__x + + + + + + + + auto_dg_for_task1_sm__x + + + + + + + + auto_dg_for_task1_sh__x + + + + + + + + auto_dg_for_task1_sf__x + + + + + + + + auto_dg_for_task1_taun__x + + + + + + + + auto_dg_for_task1_tauh__x + + + + + + + + auto_dg_for_task1_lambda__x + + + + + + + + auto_dg_for_task1_kc__x + + + + + + + + auto_dg_for_task1_ks__x + + + + + + + + auto_dg_for_task1_ff__x + + + + + + + + auto_dg_for_task1_alpha__x + + + + + + + + auto_dg_for_task1_phik__x + + + + + + + + auto_dg_for_task1_phia__x + + + + + + + + auto_dg_for_task1_phih__x + + + + + + + + auto_dg_for_task1_phif__x + + + + + + + + auto_dg_for_task1_phical__x + + + + + + + + auto_dg_for_task1_cinf__x + + + + + + + + auto_dg_for_task1_ica__x + + + + + + + + auto_dg_for_task1_isk__x + + + + + + + + auto_dg_for_task1_ibk__x + + + + + + + + auto_dg_for_task1_ikdr__x + + + + + + + + auto_dg_for_task1_ia__x + + + + + + + + auto_dg_for_task1_ik__x + + + + + + + + auto_dg_for_task1_n__x + + + + + + + + auto_dg_for_task1_h__x + + + + + + + + auto_dg_for_task1_V__x + + + + + + + + auto_dg_for_task1_cell__x + + + + + + + + auto_dg_for_task1_reaction_0000004__x + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/SBML/BIOMD0000000138_url.xml b/SBML/BIOMD0000000138_url.xml new file mode 100644 index 0000000..94b913b --- /dev/null +++ b/SBML/BIOMD0000000138_url.xml @@ -0,0 +1,539 @@ + + + + + +

The model is encoded according to the paper Low dose of dopamine may stimulate prolactin secretion by increasing fast potassium currents + Figure5 has been reproduced by MathSBML. One need to change the value of ga in order to get the three correct results.

+

the xppaut file of the model is avaiable on the following address offered by the author , http://www.math.fsu.edu/%7Ebertram/software/pituitary/JCNS_07.ode

+
+

To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. Please refer to CC0 Public Domain Dedication + for more information.

+

In summary, you are entitled to use this encoded model in absolutely any manner you deem suitable, verbatim, or with modification, alone or embedded it in a larger context, redistribute it, commercially or not, in a restricted way or not.

+
+

To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92. +

+ + + + + + + + + + + He + Enuo + + enuo@caltech.edu + + BNMC + + + + + + 2007-08-02T10:34:59Z + + + 2014-04-01T18:01:13Z + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

+ The concentration of Ca range can change from 0.1 to 0.3

+ + + + + + + + + + + + + + + + + + + + + + + + + + +

+ For figure 5A, ga=0, figure5B, ga=8, figure5C, ga=25

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