diff --git a/.gitignore b/.gitignore index 8a4e105..7e66dda 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,6 @@ +arm64 +__pycache__ +*.log *.dat x86_64/ channels/*dat diff --git a/NeuroML2/.test.validate.omt b/NeuroML2/.test.validate.omt index f48c0de..3f0f9e9 100644 --- a/NeuroML2/.test.validate.omt +++ b/NeuroML2/.test.validate.omt @@ -1,7 +1,5 @@ # Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation -# Still in development, subject to change without notice!! - -# This test will validate MOST all of the NeuroML 2 files in the current directory -target: "*.c*.nml" +# This test will validate all of the NeuroML 2 files in the current directory using: jnml -validate *.nml +target: "*.nml" engine: jNeuroML_validate diff --git a/NeuroML2/GGN.cell.nml b/NeuroML2/GGN.cell.nml index 4b1069c..af58a3e 100644 --- a/NeuroML2/GGN.cell.nml +++ b/NeuroML2/GGN.cell.nml @@ -1,4 +1,4 @@ - + NeuroML 2 file generated from ModelView by: NEURON -- VERSION 8.2.4+ HEAD (1d87d5d39+) 2024-02-09 Authors: Michael Hines, Sushil Kambampati and Padraig Gleeson, Yale University and UCL @@ -9,52 +9,52 @@ Giant GABAergic Neuron model Subhasis Ray, Zane N Aldworth, Mark A Stopfer (2020) Feedback inhibition and its control in an insect olfactory circuit eLife 9:e53281. - - - - - - - - - - - - + + + + - - + + - - Subhasis Ray - https://orcid.org/0000-0003-2566-7146 + + - - Ankur Sinha - https://orcid.org/0000-0001-7568-7167 + + - + 2024-04-25 + + Ankur Sinha + + + + Subhasis Ray + + @@ -213258,6 +213258,7 @@ + diff --git a/NeuroML2/KC.cell.nml b/NeuroML2/KC.cell.nml index 293ef23..ef64a1b 100644 --- a/NeuroML2/KC.cell.nml +++ b/NeuroML2/KC.cell.nml @@ -1,4 +1,4 @@ - + @@ -9,58 +9,58 @@ Kenyon cell model Subhasis Ray, Zane N Aldworth, Mark A Stopfer (2020) Feedback inhibition and its control in an insect olfactory circuit eLife 9:e53281. - - + + - - - - - - - - - - - - + + + + - - + + - - Subhasis Ray - https://orcid.org/0000-0003-2566-7146 + + - - Ankur Sinha - https://orcid.org/0000-0001-7568-7167 + + - + 2024-04-25 + + Ankur Sinha + + + + Subhasis Ray + + diff --git a/NeuroML2/postprocess_cells.py b/NeuroML2/postprocess_cells.py index 83586dd..c7a63cc 100644 --- a/NeuroML2/postprocess_cells.py +++ b/NeuroML2/postprocess_cells.py @@ -114,6 +114,7 @@ def postprocess_GGN(): cell.set_resistivity("0.1 kohm_cm", group_id="all") cell.set_specific_capacitance("1 uF_per_cm2", group_id="all") cell.set_init_memb_potential("-80mV") + cell.set_spike_thresh("-10mV") # L1 validation # cell.validate(recursive=True)