.gitmodules

[submodule "tools/gatk-cocleaning-tool"]
	path = tools/gatk-cocleaning-tool
	url = https://github.com/OpenGenomics/gatk-cocleaning-tool.git
[submodule "tools/muse-tool"]
	path = tools/muse-tool
	url = https://github.com/OpenGenomics/muse-tool.git
[submodule "tools/radia-tool"]
	path = tools/radia-tool
	url = https://github.com/OpenGenomics/radia-tool.git
[submodule "tools/somaticsniper-tool"]
	path = tools/somaticsniper-tool
	url = https://github.com/OpenGenomics/somaticsniper-tool.git
[submodule "tools/fpfilter-tool"]
	path = tools/fpfilter-tool
	url = https://github.com/OpenGenomics/fpfilter-tool.git
[submodule "tools/varscan-tool"]
	path = tools/varscan-tool
	url = https://github.com/OpenGenomics/varscan-tool.git
[submodule "tools/samtools-pileup-tool"]
	path = tools/samtools-pileup-tool
	url = https://github.com/OpenGenomics/samtools-pileup-tool.git
[submodule "tools/pindel-tool"]
	path = tools/pindel-tool
	url = https://github.com/OpenGenomics/pindel-tool.git
[submodule "tools/tcgavcf-tool"]
	path = tools/tcgavcf-tool
	url = https://github.com/OpenGenomics/tcgavcf-tool.git
[submodule "tools/mutect-tool"]
	path = tools/mutect-tool
	url = https://github.com/OpenGenomics/mutect-tool.git
[submodule "tools/vcf2maf-tools"]
	path = tools/vcf2maf-tools
	url = https://github.com/OpenGenomics/vcf2maf-tools.git
[submodule "tools/vcf-tools"]
	path = tools/vcf-tools
	url = https://github.com/OpenGenomics/vcf-tools.git
[submodule "tools/samtools-tool"]
	path = tools/samtools-tool
	url = https://github.com/OpenGenomics/samtools-tool
[submodule "tools/indelocator-tool"]
        path = tools/indelocator-tool
        url = https://github.com/OpenGenomics/indelocator-tool
[submodule "tools/markfiles-tool"]
	path = tools/markfiles-tool
	url = https://github.com/kamichiotti/markfiles-tool
[submodule "tools/picard-tool"]
        path = tools/picard-tool
        url = https://github.com/OpenGenomics/picard-tool