run_python_mlsc

#!/bin/bash


export PATH=/usr/pubsw/packages/python/anaconda3.7/bin:${PATH}

#OV changes to my local copy of the dev version
export PYTHONPATH="/autofs/space/tiamat_003/users/git/freesurfer/python"
#export PYTHONPATH="/autofs/space/jalapeno_001/users/olivia/pysurfer"
export PYTHONPATH=/space/freesurfer/python/linux/tensorflow-gpu:$PYTHONPATH
export PYTHONPATH=/space/freesurfer/python/linux/freesurfer:$PYTHONPATH
export LD_LIBRARY_PATH=/space/freesurfer/python/linux/envs/tf-gpu/lib:/usr/pubsw/packages/CUDA/lib64:$LD_LIBRARY_PATH
export PYTHONSTARTUP=python_startup.py
export OMP_NUM_THREADS=10
#OV change to my local copy
export PYTHONPATH=/space/freesurfer/python/fsmodule/freesurfer/src:$PYTHONPATH
#export PYTHONPATH=/cluster/visuo/users/olivia/software/python/python3.7/lib/site-packages/voxelmorph/src:$PYTHONPATH
#export PYTHONPATH=/cluster/visuo/users/olivia/software/python/python3.7/lib/site-packages/voxelmorph-sandbox/src:$PYTHONPATH
#export PYTHONPATH=/cluster/visuo/users/olivia/software/python/python3.7/lib/site-packages/neurite-sandbox/src:$PYTHONPATH
export PYTHONPATH="$PYTHONPATH:/cluster/visuo/users/olivia/software/python/toolboxes/neurite-sandbox/"
export PYTHONPATH="$PYTHONPATH:/cluster/visuo/users/olivia/software/python/toolboxes/neurite/"
export PYTHONPATH="$PYTHONPATH:/cluster/visuo/users/olivia/software/python/toolboxes/voxelmorph/"
export PYTHONPATH="$PYTHONPATH:/cluster/visuo/users/olivia/software/python/toolboxes/voxelmorph-sandbox/"
export PYTHONPATH="$PYTHONPATH:/cluster/visuo/users/olivia/software/python/toolboxes/pystrum/"
#export PYTHONPATH=/space/freesurfer/python/packages/voxelmorph-sandbox/voxelmorph-affine/src:$PYTHONPATH
#source /space/freesurfer/python/packages/voxelmorph/setup.sh
export TF_CPP_MIN_LOG_LEVEL=2
jupyter notebook --no-browser --port=8890