From 699f0db5f05007e545c261386957ee61afe35e33 Mon Sep 17 00:00:00 2001 From: Jamie Gilbert Date: Fri, 10 Jan 2025 11:19:52 -0800 Subject: [PATCH] Version 3 3 1hotfix (#1153) * Date diff hot fix (#1151) * DATEDIFF fixes to cast (cherry picked from commit 0805dde632f1446ceb296b5898d75d06a49c7afe) * Update to version number * Package maintenance --- DESCRIPTION | 2 +- R/CohortCharacterizationDiagnostics.R | 2 +- R/CohortDiagnostics.R | 2 +- R/CohortLevelDiagnostics.R | 2 +- R/CohortRelationship.R | 2 +- R/ConceptIds.R | 2 +- R/ConceptSetUtils.R | 2 +- R/ConceptSets.R | 2 +- R/DataSourceInformation.R | 2 +- R/ExportCharacterization.R | 2 +- R/IncidenceRates.R | 2 +- R/InclusionRules.R | 2 +- R/Incremental.R | 2 +- R/MetaDataDiagnostics.R | 2 +- R/Private.R | 2 +- R/ResultsDataModel.R | 2 +- R/RunDiagnostics.R | 2 +- R/Shared.R | 2 +- R/Shiny.R | 2 +- R/TimeSeries.R | 2 +- R/VisitContext.R | 2 +- docs/404.html | 2 +- docs/articles/CreatingAStudyPackage.html | 4 ++-- .../DatabaseModeInDiagnosticsExplorer.html | 4 ++-- docs/articles/RunningCohortDiagnostics.html | 4 ++-- ...iewingResultsUsingDiagnosticsExplorer.html | 4 ++-- docs/articles/WhatIsCohortDiagnostics.html | 4 ++-- docs/articles/index.html | 2 +- docs/authors.html | 10 +++++----- docs/index.html | 2 +- docs/news/index.html | 2 +- docs/pkgdown.yml | 2 +- docs/reference/CohortDiagnostics-package.html | 2 +- docs/reference/checkInputFileEncoding.html | 2 +- .../createDiagnosticsExplorerZip.html | 2 +- docs/reference/createMergedResultsFile.html | 2 +- docs/reference/createResultsDataModel.html | 2 +- docs/reference/deployPositConnectApp.html | 2 +- docs/reference/executeDiagnostics.html | 2 +- .../getCdmDataSourceInformation.html | 2 +- docs/reference/getCohortCounts.html | 2 +- docs/reference/getDataMigrator.html | 2 +- .../getDefaultCovariateSettings.html | 2 +- .../getDefaultVocabularyTableNames.html | 2 +- .../getResultsDataModelSpecifications.html | 2 +- docs/reference/index.html | 2 +- docs/reference/launchDiagnosticsExplorer.html | 2 +- docs/reference/migrateDataModel.html | 2 +- .../runCohortRelationshipDiagnostics.html | 2 +- .../runCohortTimeSeriesDiagnostics.html | 2 +- docs/reference/uploadResults.html | 2 +- docs/search.json | 2 +- extras/CohortDiagnostics.pdf | Bin 119945 -> 119943 bytes extras/PackageMaintenance.R | 2 +- inst/doc/RunningCohortDiagnostics.pdf | Bin 225766 -> 225531 bytes ...ViewingResultsUsingDiagnosticsExplorer.pdf | Bin 376526 -> 376358 bytes inst/doc/WhatIsCohortDiagnostics.pdf | Bin 130174 -> 129996 bytes inst/shiny/DiagnosticsExplorer/global.R | 1 + inst/sql/sql_server/UpdateVersionNumber.sql | 3 ++- 59 files changed, 65 insertions(+), 63 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 4e1f58d02..c3b9b4372 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: CohortDiagnostics Type: Package Title: Diagnostics for OHDSI Cohorts -Version: 3.3.0.99999 +Version: 3.3.1.9999 Date: 2024-22-10 Authors@R: c( person("Jamie", "Gilbert", email = "gilbert@ohdsi.org", role = c("aut", "cre")), diff --git a/R/CohortCharacterizationDiagnostics.R b/R/CohortCharacterizationDiagnostics.R index 1b792dabc..53d40536c 100644 --- a/R/CohortCharacterizationDiagnostics.R +++ b/R/CohortCharacterizationDiagnostics.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/CohortDiagnostics.R b/R/CohortDiagnostics.R index eca6dd9e1..2869d2271 100644 --- a/R/CohortDiagnostics.R +++ b/R/CohortDiagnostics.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/CohortLevelDiagnostics.R b/R/CohortLevelDiagnostics.R index 36f3acd8e..edec1076d 100644 --- a/R/CohortLevelDiagnostics.R +++ b/R/CohortLevelDiagnostics.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/CohortRelationship.R b/R/CohortRelationship.R index 7ececb130..3e0f32f86 100644 --- a/R/CohortRelationship.R +++ b/R/CohortRelationship.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/ConceptIds.R b/R/ConceptIds.R index 6e550d623..d037595c3 100644 --- a/R/ConceptIds.R +++ b/R/ConceptIds.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/ConceptSetUtils.R b/R/ConceptSetUtils.R index f3ff74c4b..f94556151 100644 --- a/R/ConceptSetUtils.R +++ b/R/ConceptSetUtils.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/ConceptSets.R b/R/ConceptSets.R index 10ecbb709..6923f89ca 100644 --- a/R/ConceptSets.R +++ b/R/ConceptSets.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/DataSourceInformation.R b/R/DataSourceInformation.R index 4079820c6..bf004b91e 100644 --- a/R/DataSourceInformation.R +++ b/R/DataSourceInformation.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/ExportCharacterization.R b/R/ExportCharacterization.R index 8dcd2eec4..56c2cb816 100644 --- a/R/ExportCharacterization.R +++ b/R/ExportCharacterization.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/IncidenceRates.R b/R/IncidenceRates.R index 7a5589ed2..77a88320f 100644 --- a/R/IncidenceRates.R +++ b/R/IncidenceRates.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/InclusionRules.R b/R/InclusionRules.R index 240bd7c8d..eeb9417a5 100644 --- a/R/InclusionRules.R +++ b/R/InclusionRules.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/Incremental.R b/R/Incremental.R index cad207db2..7ffa58141 100644 --- a/R/Incremental.R +++ b/R/Incremental.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/MetaDataDiagnostics.R b/R/MetaDataDiagnostics.R index a74b2fbd8..9cbcf7849 100644 --- a/R/MetaDataDiagnostics.R +++ b/R/MetaDataDiagnostics.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/Private.R b/R/Private.R index 8748527f4..84e5b4d31 100644 --- a/R/Private.R +++ b/R/Private.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/ResultsDataModel.R b/R/ResultsDataModel.R index 1061eda6a..adcb83cb0 100644 --- a/R/ResultsDataModel.R +++ b/R/ResultsDataModel.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/RunDiagnostics.R b/R/RunDiagnostics.R index 766955a23..e8c794825 100644 --- a/R/RunDiagnostics.R +++ b/R/RunDiagnostics.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/Shared.R b/R/Shared.R index f5a7a1a82..e2159feb8 100644 --- a/R/Shared.R +++ b/R/Shared.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/Shiny.R b/R/Shiny.R index 979795155..e0f878096 100644 --- a/R/Shiny.R +++ b/R/Shiny.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/TimeSeries.R b/R/TimeSeries.R index f0f43f03e..75c55a9ae 100644 --- a/R/TimeSeries.R +++ b/R/TimeSeries.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/R/VisitContext.R b/R/VisitContext.R index 232fcf3f7..95639da3f 100644 --- a/R/VisitContext.R +++ b/R/VisitContext.R @@ -1,4 +1,4 @@ -# Copyright 2024 Observational Health Data Sciences and Informatics +# Copyright 2025 Observational Health Data Sciences and Informatics # # This file is part of CohortDiagnostics # diff --git a/docs/404.html b/docs/404.html index d789290bf..54efbe86d 100644 --- a/docs/404.html +++ b/docs/404.html @@ -20,7 +20,7 @@ CohortDiagnostics - 3.3.0 + 3.3.1