diff --git a/docs/notebooks/09_diff_splice.ipynb b/docs/notebooks/09_diff_splice.ipynb index 3fd5611..45e0cd1 100644 --- a/docs/notebooks/09_diff_splice.ipynb +++ b/docs/notebooks/09_diff_splice.ipynb @@ -775,15 +775,258 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 6, "metadata": {}, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ - " 4%|▍ | 477/10803 [00:00<00:04, 2266.87genes/s]" + "100%|██████████| 10803/10803 [00:05<00:00, 2003.31genes/s]\n" ] + }, + { + "data": { + "text/html": [ + "
\n", + " | gene_id | \n", + "gene_name | \n", + "strand | \n", + "eventA_type | \n", + "eventB_type | \n", + "eventA_start | \n", + "evemtA_end | \n", + "eventB_start | \n", + "eventB_end | \n", + "pvalue | \n", + "padj | \n", + "stat | \n", + "log2OR | \n", + "dcPSI_AB | \n", + "dcPSI_BA | \n", + "priA_priB | \n", + "priA_altB | \n", + "altA_priB | \n", + "altA_altB | \n", + "priA_priB_trID | \n", + "priA_altB_trID | \n", + "altA_priB_trID | \n", + "altA_altB_trID | \n", + "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
52 | \n", + "ENSG00000147813.16 | \n", + "NAPRT | \n", + "- | \n", + "IR | \n", + "IR | \n", + "143575093 | \n", + "143575190 | \n", + "143574900 | \n", + "143574985 | \n", + "4.436456e-82 | \n", + "5.501206e-80 | \n", + "98.895238 | \n", + "6.627829 | \n", + "0.525552 | \n", + "0.637141 | \n", + "472 | \n", + "45 | \n", + "14 | \n", + "132 | \n", + "[0, 5, 6, 7, 54, 62, 73, 17, 100, 24, 30, 46, ... | \n", + "[25, 48, 129, 68, 128, 33, 133, 101, 135, 141,... | \n", + "[41, 96, 110, 112, 115] | \n", + "[21, 42, 1, 12, 31, 71, 44, 51, 63, 78, 92, 13... | \n", + "
107 | \n", + "ENSG00000182325.11 | \n", + "FBXL6 | \n", + "- | \n", + "IR | \n", + "IR | \n", + "144357786 | \n", + "144358031 | \n", + "144357121 | \n", + "144357438 | \n", + "1.074426e-74 | \n", + "6.661440e-73 | \n", + "1715.833333 | \n", + "10.744694 | \n", + "0.472927 | \n", + "0.469753 | \n", + "142 | \n", + "3 | \n", + "4 | \n", + "145 | \n", + "[1, 21, 34, 7, 32, 36, 38, 72, 45, 81, 51, 85,... | \n", + "[89, 87, 71] | \n", + "[4, 40] | \n", + "[2, 9, 19, 41, 14, 24, 44, 48, 56, 11, 54, 17,... | \n", + "
55 | \n", + "ENSG00000167700.9 | \n", + "MFSD3 | \n", + "+ | \n", + "IR | \n", + "IR | \n", + "144510015 | \n", + "144510359 | \n", + "144510507 | \n", + "144510597 | \n", + "4.299909e-32 | \n", + "1.777296e-30 | \n", + "inf | \n", + "38.459595 | \n", + "0.503866 | \n", + "0.743802 | \n", + "180 | \n", + "20 | \n", + "0 | \n", + "42 | \n", + "[0, 3, 23, 35, 5, 38, 39] | \n", + "[2, 21, 19, 20, 29] | \n", + "[] | \n", + "[11, 26, 14, 36, 18] | \n", + "
45 | \n", + "ENSG00000160957.15 | \n", + "RECQL4 | \n", + "- | \n", + "IR | \n", + "IR | \n", + "144512771 | \n", + "144512846 | \n", + "144512324 | \n", + "144512391 | \n", + "1.341822e-31 | \n", + "4.159649e-30 | \n", + "11.529161 | \n", + "3.527216 | \n", + "0.331031 | \n", + "0.344543 | \n", + "1231 | \n", + "87 | \n", + "81 | \n", + "66 | \n", + "[22, 31, 6, 20, 114, 147, 124, 11, 38, 72, 13,... | \n", + "[401, 191, 221, 94, 364, 68, 204, 127, 519, 17... | \n", + "[117, 136, 279, 259, 271, 532, 292, 49, 184, 2... | \n", + "[408, 110, 112, 28, 29, 158, 190, 215, 495, 51... | \n", + "
108 | \n", + "ENSG00000182325.11 | \n", + "FBXL6 | \n", + "- | \n", + "IR | \n", + "IR | \n", + "144357786 | \n", + "144358031 | \n", + "144356915 | \n", + "144356989 | \n", + "6.335233e-27 | \n", + "1.571138e-25 | \n", + "51.918519 | \n", + "5.698177 | \n", + "0.228402 | \n", + "0.451672 | \n", + "163 | \n", + "90 | \n", + "3 | \n", + "86 | \n", + "[1, 12, 21, 34, 4, 7, 75, 86, 15, 23, 25, 26, ... | \n", + "[2, 3, 41, 24, 44, 48, 8, 17, 37, 6, 18, 33, 5... | \n", + "[32, 53] | \n", + "[9, 19, 14, 56, 11, 13, 54, 42, 63, 64, 5, 16,... | \n", + "
\n", + " | gene_id | \n", + "gene_name | \n", + "chrom | \n", + "strand | \n", + "start | \n", + "end | \n", + "padj | \n", + "pvalue | \n", + "deltaPI | \n", + "transcript_ids | \n", + "
---|---|---|---|---|---|---|---|---|---|---|
5982 | \n", + "ENSG00000070756.17 | \n", + "PABPC1 | \n", + "chr8 | \n", + "- | \n", + "100685815 | \n", + "100722809 | \n", + "0.000000e+00 | \n", + "0.000000e+00 | \n", + "-0.289084 | \n", + "[2, 1] | \n", + "
5094 | \n", + "ENSG00000156482.11 | \n", + "RPL30 | \n", + "chr8 | \n", + "- | \n", + "98024850 | \n", + "98046469 | \n", + "0.000000e+00 | \n", + "0.000000e+00 | \n", + "0.515042 | \n", + "[3, 2] | \n", + "
4805 | \n", + "ENSG00000161016.18 | \n", + "RPL8 | \n", + "chr8 | \n", + "- | \n", + "144789764 | \n", + "144792587 | \n", + "0.000000e+00 | \n", + "0.000000e+00 | \n", + "-0.477042 | \n", + "[2, 6] | \n", + "
4632 | \n", + "ENSG00000164924.18 | \n", + "YWHAZ | \n", + "chr8 | \n", + "- | \n", + "100916522 | \n", + "100953388 | \n", + "0.000000e+00 | \n", + "0.000000e+00 | \n", + "0.303116 | \n", + "[31, 11] | \n", + "
4172 | \n", + "ENSG00000147604.14 | \n", + "RPL7 | \n", + "chr8 | \n", + "- | \n", + "73290241 | \n", + "73295789 | \n", + "1.157393e-170 | \n", + "1.885004e-172 | \n", + "0.092221 | \n", + "[2, 31] | \n", + "
3235 | \n", + "ENSG00000104408.11 | \n", + "EIF3E | \n", + "chr8 | \n", + "- | \n", + "108162786 | \n", + "108443496 | \n", + "2.092139e-137 | \n", + "4.088872e-139 | \n", + "0.166874 | \n", + "[0, 20] | \n", + "
9988 | \n", + "ENSG00000104312.8 | \n", + "RIPK2 | \n", + "chr8 | \n", + "+ | \n", + "89757805 | \n", + "89791064 | \n", + "6.088181e-101 | \n", + "1.388185e-102 | \n", + "0.677697 | \n", + "[2, 0] | \n", + "
4239 | \n", + "ENSG00000129696.13 | \n", + "TTI2 | \n", + "chr8 | \n", + "- | \n", + "33473385 | \n", + "33513185 | \n", + "9.366700e-100 | \n", + "2.440834e-101 | \n", + "-0.617118 | \n", + "[3, 22] | \n", + "
1369 | \n", + "ENSG00000147684.10 | \n", + "NDUFB9 | \n", + "chr8 | \n", + "+ | \n", + "124539100 | \n", + "124580648 | \n", + "4.019587e-89 | \n", + "1.178381e-90 | \n", + "0.399575 | \n", + "[0, -1] | \n", + "
1525 | \n", + "ENSG00000104320.15 | \n", + "NBN | \n", + "chr8 | \n", + "- | \n", + "89924514 | \n", + "90003228 | \n", + "5.103980e-88 | \n", + "1.662534e-89 | \n", + "-0.409024 | \n", + "[2, 1] | \n", + "