- M01A: Intro cutscene, Donau, Transport escort mission
- M01B: Rogue Base destruction Pittsburgh Debris Field
- M02: Ashcroft
- M03: Convoy to Willard
- M04: Escape Liberty → Bretonia
- M05: Sprague
- M06: Hovis
- M07: Escape Bretonia → Kusari
- M08: Blood Dragons Transport Raid
- M09: Tekagi's Arch
- M10: Bundschuh
- M11: Save President Jacobi
- M12: Nomad Lair Power Cell
- M13: Dyson Sphere Final Fight