24hr_Example.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "ea4444bb-b96c-49c7-89c7-ce3b5eeaf278",
   "metadata": {},
   "source": [
    "# Install Required Software"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "dd27a9d8-86ba-4566-aaba-c1397831637a",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current\n",
      "                                 Dload  Upload   Total   Spent    Left  Speed\n",
      "  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\n",
      "  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0\n",
      "100 90.4M  100 90.4M    0     0  21.9M      0  0:00:04  0:00:04 --:--:-- 26.7M\n",
      "PREFIX=/home/jupyter/mambaforge\n",
      "Unpacking payload ...\n",
      "Extracting python-3.10.6-ha86cf86_0_cpython.tar.bz2\n",
      "Extracting _libgcc_mutex-0.1-conda_forge.tar.bz2\n",
      "Extracting ca-certificates-2022.9.24-ha878542_0.tar.bz2\n",
      "Extracting ld_impl_linux-64-2.39-hc81fddc_0.tar.bz2\n",
      "Extracting libstdcxx-ng-12.2.0-h46fd767_19.tar.bz2\n",
      "Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2\n",
      "Extracting tzdata-2022f-h191b570_0.tar.bz2\n",
      "Extracting libgomp-12.2.0-h65d4601_19.tar.bz2\n",
      "Extracting _openmp_mutex-4.5-2_gnu.tar.bz2\n",
      "Extracting libgcc-ng-12.2.0-h65d4601_19.tar.bz2\n",
      "Extracting bzip2-1.0.8-h7f98852_4.tar.bz2\n",
      "Extracting c-ares-1.18.1-h7f98852_0.tar.bz2\n",
      "Extracting fmt-9.1.0-h924138e_0.tar.bz2\n",
      "Extracting icu-70.1-h27087fc_0.tar.bz2\n",
      "Extracting keyutils-1.6.1-h166bdaf_0.tar.bz2\n",
      "Extracting libev-4.33-h516909a_1.tar.bz2\n",
      "Extracting libffi-3.4.2-h7f98852_5.tar.bz2\n",
      "Extracting libiconv-1.17-h166bdaf_0.tar.bz2\n",
      "Extracting libnsl-2.0.0-h7f98852_0.tar.bz2\n",
      "Extracting libuuid-2.32.1-h7f98852_1000.tar.bz2\n",
      "Extracting libzlib-1.2.13-h166bdaf_4.tar.bz2\n",
      "Extracting lz4-c-1.9.3-h9c3ff4c_1.tar.bz2\n",
      "Extracting lzo-2.10-h516909a_1000.tar.bz2\n",
      "Extracting ncurses-6.3-h27087fc_1.tar.bz2\n",
      "Extracting openssl-3.0.7-h166bdaf_0.tar.bz2\n",
      "Extracting reproc-14.2.3-h7f98852_0.tar.bz2\n",
      "Extracting xz-5.2.6-h166bdaf_0.tar.bz2\n",
      "Extracting yaml-0.2.5-h7f98852_2.tar.bz2\n",
      "Extracting yaml-cpp-0.7.0-h27087fc_2.tar.bz2\n",
      "Extracting libedit-3.1.20191231-he28a2e2_2.tar.bz2\n",
      "Extracting libnghttp2-1.47.0-hff17c54_1.tar.bz2\n",
      "Extracting libsolv-0.7.22-h6239696_0.tar.bz2\n",
      "Extracting libsqlite-3.40.0-h753d276_0.tar.bz2\n",
      "Extracting libssh2-1.10.0-hf14f497_3.tar.bz2\n",
      "Extracting libxml2-2.10.3-h7463322_0.tar.bz2\n",
      "Extracting readline-8.1.2-h0f457ee_0.tar.bz2\n",
      "Extracting reproc-cpp-14.2.3-h9c3ff4c_0.tar.bz2\n",
      "Extracting tk-8.6.12-h27826a3_0.tar.bz2\n",
      "Extracting zstd-1.5.2-h6239696_4.tar.bz2\n",
      "Extracting krb5-1.19.3-h08a2579_0.tar.bz2\n",
      "Extracting libarchive-3.5.2-hada088e_3.tar.bz2\n",
      "Extracting certifi-2022.9.24-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting charset-normalizer-2.1.1-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting colorama-0.4.6-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting idna-3.4-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting libcurl-7.86.0-h2283fc2_1.tar.bz2\n",
      "Extracting pycparser-2.21-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting pysocks-1.7.1-pyha2e5f31_6.tar.bz2\n",
      "Extracting python_abi-3.10-2_cp310.tar.bz2\n",
      "Extracting setuptools-65.5.1-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting toolz-0.12.0-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting wheel-0.38.4-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting cffi-1.15.1-py310h255011f_2.tar.bz2\n",
      "Extracting libmamba-1.0.0-h9eff5f0_2.tar.bz2\n",
      "Extracting pip-22.3.1-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting pycosat-0.6.4-py310h5764c6d_1.tar.bz2\n",
      "Extracting ruamel_yaml-0.15.80-py310h5764c6d_1008.tar.bz2\n",
      "Extracting tqdm-4.64.1-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting brotlipy-0.7.0-py310h5764c6d_1005.tar.bz2\n",
      "Extracting conda-package-handling-1.9.0-py310h5764c6d_1.tar.bz2\n",
      "Extracting cryptography-38.0.3-py310h600f1e7_0.tar.bz2\n",
      "Extracting libmambapy-1.0.0-py310hd5a56e8_2.tar.bz2\n",
      "Extracting pyopenssl-22.1.0-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting urllib3-1.26.11-pyhd8ed1ab_0.tar.bz2\n",
      "Extracting requests-2.28.1-pyhd8ed1ab_1.tar.bz2\n",
      "Extracting conda-22.9.0-py310hff52083_2.tar.bz2\n",
      "Extracting mamba-1.0.0-py310h51d5547_2.tar.bz2\n",
      "\n",
      "                                           __\n",
      "          __  ______ ___  ____ _____ ___  / /_  ____ _\n",
      "         / / / / __ `__ \\/ __ `/ __ `__ \\/ __ \\/ __ `/\n",
      "        / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /\n",
      "       / .___/_/ /_/ /_/\\__,_/_/ /_/ /_/_.___/\\__,_/\n",
      "      /_/\n",
      "\n",
      "conda-forge/linux-64                                        Using cache\n",
      "conda-forge/noarch                                          Using cache\n",
      "\n",
      "Transaction\n",
      "\n",
      "  Prefix: /home/jupyter/mambaforge\n",
      "\n",
      "  Updating specs:\n",
      "\n",
      "   - python==3.10.6=ha86cf86_0_cpython\n",
      "   - _libgcc_mutex==0.1=conda_forge\n",
      "   - ca-certificates==2022.9.24=ha878542_0\n",
      "   - ld_impl_linux-64==2.39=hc81fddc_0\n",
      "   - libstdcxx-ng==12.2.0=h46fd767_19\n",
      "   - pybind11-abi==4=hd8ed1ab_3\n",
      "   - tzdata==2022f=h191b570_0\n",
      "   - libgomp==12.2.0=h65d4601_19\n",
      "   - _openmp_mutex==4.5=2_gnu\n",
      "   - libgcc-ng==12.2.0=h65d4601_19\n",
      "   - bzip2==1.0.8=h7f98852_4\n",
      "   - c-ares==1.18.1=h7f98852_0\n",
      "   - fmt==9.1.0=h924138e_0\n",
      "   - icu==70.1=h27087fc_0\n",
      "   - keyutils==1.6.1=h166bdaf_0\n",
      "   - libev==4.33=h516909a_1\n",
      "   - libffi==3.4.2=h7f98852_5\n",
      "   - libiconv==1.17=h166bdaf_0\n",
      "   - libnsl==2.0.0=h7f98852_0\n",
      "   - libuuid==2.32.1=h7f98852_1000\n",
      "   - libzlib==1.2.13=h166bdaf_4\n",
      "   - lz4-c==1.9.3=h9c3ff4c_1\n",
      "   - lzo==2.10=h516909a_1000\n",
      "   - ncurses==6.3=h27087fc_1\n",
      "   - openssl==3.0.7=h166bdaf_0\n",
      "   - reproc==14.2.3=h7f98852_0\n",
      "   - xz==5.2.6=h166bdaf_0\n",
      "   - yaml==0.2.5=h7f98852_2\n",
      "   - yaml-cpp==0.7.0=h27087fc_2\n",
      "   - libedit==3.1.20191231=he28a2e2_2\n",
      "   - libnghttp2==1.47.0=hff17c54_1\n",
      "   - libsolv==0.7.22=h6239696_0\n",
      "   - libsqlite==3.40.0=h753d276_0\n",
      "   - libssh2==1.10.0=hf14f497_3\n",
      "   - libxml2==2.10.3=h7463322_0\n",
      "   - readline==8.1.2=h0f457ee_0\n",
      "   - reproc-cpp==14.2.3=h9c3ff4c_0\n",
      "   - tk==8.6.12=h27826a3_0\n",
      "   - zstd==1.5.2=h6239696_4\n",
      "   - krb5==1.19.3=h08a2579_0\n",
      "   - libarchive==3.5.2=hada088e_3\n",
      "   - certifi==2022.9.24=pyhd8ed1ab_0\n",
      "   - charset-normalizer==2.1.1=pyhd8ed1ab_0\n",
      "   - colorama==0.4.6=pyhd8ed1ab_0\n",
      "   - idna==3.4=pyhd8ed1ab_0\n",
      "   - libcurl==7.86.0=h2283fc2_1\n",
      "   - pycparser==2.21=pyhd8ed1ab_0\n",
      "   - pysocks==1.7.1=pyha2e5f31_6\n",
      "   - python_abi==3.10=2_cp310\n",
      "   - setuptools==65.5.1=pyhd8ed1ab_0\n",
      "   - toolz==0.12.0=pyhd8ed1ab_0\n",
      "   - wheel==0.38.4=pyhd8ed1ab_0\n",
      "   - cffi==1.15.1=py310h255011f_2\n",
      "   - libmamba==1.0.0=h9eff5f0_2\n",
      "   - pip==22.3.1=pyhd8ed1ab_0\n",
      "   - pycosat==0.6.4=py310h5764c6d_1\n",
      "   - ruamel_yaml==0.15.80=py310h5764c6d_1008\n",
      "   - tqdm==4.64.1=pyhd8ed1ab_0\n",
      "   - brotlipy==0.7.0=py310h5764c6d_1005\n",
      "   - conda-package-handling==1.9.0=py310h5764c6d_1\n",
      "   - cryptography==38.0.3=py310h600f1e7_0\n",
      "   - libmambapy==1.0.0=py310hd5a56e8_2\n",
      "   - pyopenssl==22.1.0=pyhd8ed1ab_0\n",
      "   - urllib3==1.26.11=pyhd8ed1ab_0\n",
      "   - requests==2.28.1=pyhd8ed1ab_1\n",
      "   - conda==22.9.0=py310hff52083_2\n",
      "   - mamba==1.0.0=py310h51d5547_2\n",
      "\n",
      "\n",
      "  Package                        Version  Build               Channel                    Size\n",
      "───────────────────────────────────────────────────────────────────────────────────────────────\n",
      "  Install:\n",
      "───────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[32m  + _libgcc_mutex         \u001b[00m           0.1  conda_forge         conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + _openmp_mutex         \u001b[00m           4.5  2_gnu               conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + brotlipy              \u001b[00m         0.7.0  py310h5764c6d_1005  conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + bzip2                 \u001b[00m         1.0.8  h7f98852_4          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + c-ares                \u001b[00m        1.18.1  h7f98852_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + ca-certificates       \u001b[00m     2022.9.24  ha878542_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + certifi               \u001b[00m     2022.9.24  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + cffi                  \u001b[00m        1.15.1  py310h255011f_2     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + charset-normalizer    \u001b[00m         2.1.1  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + colorama              \u001b[00m         0.4.6  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + conda                 \u001b[00m        22.9.0  py310hff52083_2     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + conda-package-handling\u001b[00m         1.9.0  py310h5764c6d_1     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + cryptography          \u001b[00m        38.0.3  py310h600f1e7_0     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + fmt                   \u001b[00m         9.1.0  h924138e_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + icu                   \u001b[00m          70.1  h27087fc_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + idna                  \u001b[00m           3.4  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + keyutils              \u001b[00m         1.6.1  h166bdaf_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + krb5                  \u001b[00m        1.19.3  h08a2579_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + ld_impl_linux-64      \u001b[00m          2.39  hc81fddc_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libarchive            \u001b[00m         3.5.2  hada088e_3          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libcurl               \u001b[00m        7.86.0  h2283fc2_1          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libedit               \u001b[00m  3.1.20191231  he28a2e2_2          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libev                 \u001b[00m          4.33  h516909a_1          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libffi                \u001b[00m         3.4.2  h7f98852_5          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libgcc-ng             \u001b[00m        12.2.0  h65d4601_19         conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libgomp               \u001b[00m        12.2.0  h65d4601_19         conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libiconv              \u001b[00m          1.17  h166bdaf_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libmamba              \u001b[00m         1.0.0  h9eff5f0_2          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libmambapy            \u001b[00m         1.0.0  py310hd5a56e8_2     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libnghttp2            \u001b[00m        1.47.0  hff17c54_1          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libnsl                \u001b[00m         2.0.0  h7f98852_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libsolv               \u001b[00m        0.7.22  h6239696_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libsqlite             \u001b[00m        3.40.0  h753d276_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libssh2               \u001b[00m        1.10.0  hf14f497_3          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libstdcxx-ng          \u001b[00m        12.2.0  h46fd767_19         conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libuuid               \u001b[00m        2.32.1  h7f98852_1000       conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libxml2               \u001b[00m        2.10.3  h7463322_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libzlib               \u001b[00m        1.2.13  h166bdaf_4          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + lz4-c                 \u001b[00m         1.9.3  h9c3ff4c_1          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + lzo                   \u001b[00m          2.10  h516909a_1000       conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + mamba                 \u001b[00m         1.0.0  py310h51d5547_2     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + ncurses               \u001b[00m           6.3  h27087fc_1          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + openssl               \u001b[00m         3.0.7  h166bdaf_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pip                   \u001b[00m        22.3.1  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pybind11-abi          \u001b[00m             4  hd8ed1ab_3          conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pycosat               \u001b[00m         0.6.4  py310h5764c6d_1     conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pycparser             \u001b[00m          2.21  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pyopenssl             \u001b[00m        22.1.0  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + pysocks               \u001b[00m         1.7.1  pyha2e5f31_6        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + python                \u001b[00m        3.10.6  ha86cf86_0_cpython  conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + python_abi            \u001b[00m          3.10  2_cp310             conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + readline              \u001b[00m         8.1.2  h0f457ee_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + reproc                \u001b[00m        14.2.3  h7f98852_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + reproc-cpp            \u001b[00m        14.2.3  h9c3ff4c_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + requests              \u001b[00m        2.28.1  pyhd8ed1ab_1        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + ruamel_yaml           \u001b[00m       0.15.80  py310h5764c6d_1008  conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + setuptools            \u001b[00m        65.5.1  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + tk                    \u001b[00m        8.6.12  h27826a3_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + toolz                 \u001b[00m        0.12.0  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + tqdm                  \u001b[00m        4.64.1  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + tzdata                \u001b[00m         2022f  h191b570_0          conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + urllib3               \u001b[00m       1.26.11  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + wheel                 \u001b[00m        0.38.4  pyhd8ed1ab_0        conda-forge/noarch  \u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + xz                    \u001b[00m         5.2.6  h166bdaf_0          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + yaml                  \u001b[00m         0.2.5  h7f98852_2          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + yaml-cpp              \u001b[00m         0.7.0  h27087fc_2          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + zstd                  \u001b[00m         1.5.2  h6239696_4          conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\n",
      "  Summary:\n",
      "\n",
      "  Install: 67 packages\n",
      "\n",
      "  Total download: 0 B\n",
      "\n",
      "───────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\n",
      "Transaction starting\n",
      "\u001b[?25l\u001b[2K\u001b[0G\u001b[?25hLinking _libgcc_mutex-0.1-conda_forge\n",
      "Linking ca-certificates-2022.9.24-ha878542_0\n",
      "Linking ld_impl_linux-64-2.39-hc81fddc_0\n",
      "Linking libstdcxx-ng-12.2.0-h46fd767_19\n",
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      "Linking libgcc-ng-12.2.0-h65d4601_19\n",
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      "Linking yaml-0.2.5-h7f98852_2\n",
      "Linking xz-5.2.6-h166bdaf_0\n",
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      "Linking lzo-2.10-h516909a_1000\n",
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      "Linking keyutils-1.6.1-h166bdaf_0\n",
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      "Linking fmt-9.1.0-h924138e_0\n",
      "Linking c-ares-1.18.1-h7f98852_0\n",
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      "Linking reproc-cpp-14.2.3-h9c3ff4c_0\n",
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      "Linking libedit-3.1.20191231-he28a2e2_2\n",
      "Linking zstd-1.5.2-h6239696_4\n",
      "Linking tk-8.6.12-h27826a3_0\n",
      "Linking libssh2-1.10.0-hf14f497_3\n",
      "Linking libsqlite-3.40.0-h753d276_0\n",
      "Linking libsolv-0.7.22-h6239696_0\n",
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      "Linking libnghttp2-1.47.0-hff17c54_1\n",
      "Linking krb5-1.19.3-h08a2579_0\n",
      "Linking libarchive-3.5.2-hada088e_3\n",
      "Linking libcurl-7.86.0-h2283fc2_1\n",
      "Linking libmamba-1.0.0-h9eff5f0_2\n",
      "Linking pybind11-abi-4-hd8ed1ab_3\n",
      "Linking tzdata-2022f-h191b570_0\n",
      "Linking python-3.10.6-ha86cf86_0_cpython\n",
      "Linking wheel-0.38.4-pyhd8ed1ab_0\n",
      "Linking setuptools-65.5.1-pyhd8ed1ab_0\n",
      "Linking pip-22.3.1-pyhd8ed1ab_0\n",
      "Linking toolz-0.12.0-pyhd8ed1ab_0\n",
      "Linking pysocks-1.7.1-pyha2e5f31_6\n",
      "Linking pycparser-2.21-pyhd8ed1ab_0\n",
      "Linking idna-3.4-pyhd8ed1ab_0\n",
      "Linking colorama-0.4.6-pyhd8ed1ab_0\n",
      "Linking charset-normalizer-2.1.1-pyhd8ed1ab_0\n",
      "Linking certifi-2022.9.24-pyhd8ed1ab_0\n",
      "Linking tqdm-4.64.1-pyhd8ed1ab_0\n",
      "Linking python_abi-3.10-2_cp310\n",
      "Linking libmambapy-1.0.0-py310hd5a56e8_2\n",
      "Linking conda-package-handling-1.9.0-py310h5764c6d_1\n",
      "Linking ruamel_yaml-0.15.80-py310h5764c6d_1008\n",
      "Linking pycosat-0.6.4-py310h5764c6d_1\n",
      "Linking cffi-1.15.1-py310h255011f_2\n",
      "Linking cryptography-38.0.3-py310h600f1e7_0\n",
      "Linking brotlipy-0.7.0-py310h5764c6d_1005\n",
      "Linking pyopenssl-22.1.0-pyhd8ed1ab_0\n",
      "Linking urllib3-1.26.11-pyhd8ed1ab_0\n",
      "Linking requests-2.28.1-pyhd8ed1ab_1\n",
      "Linking conda-22.9.0-py310hff52083_2\n",
      "Linking mamba-1.0.0-py310h51d5547_2\n",
      "Transaction finished\n",
      "installation finished.\n",
      "\n",
      "                  __    __    __    __\n",
      "                 /  \\  /  \\  /  \\  /  \\\n",
      "                /    \\/    \\/    \\/    \\\n",
      "███████████████/  /██/  /██/  /██/  /████████████████████████\n",
      "              /  / \\   / \\   / \\   / \\  \\____\n",
      "             /  /   \\_/   \\_/   \\_/   \\    o \\__,\n",
      "            / _/                       \\_____/  `\n",
      "            |/\n",
      "        ███╗   ███╗ █████╗ ███╗   ███╗██████╗  █████╗\n",
      "        ████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗\n",
      "        ██╔████╔██║███████║██╔████╔██║██████╔╝███████║\n",
      "        ██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║\n",
      "        ██║ ╚═╝ ██║██║  ██║██║ ╚═╝ ██║██████╔╝██║  ██║\n",
      "        ╚═╝     ╚═╝╚═╝  ╚═╝╚═╝     ╚═╝╚═════╝ ╚═╝  ╚═╝\n",
      "\n",
      "        mamba (1.0.0) supported by @QuantStack\n",
      "\n",
      "        GitHub:  https://github.com/mamba-org/mamba\n",
      "        Twitter: https://twitter.com/QuantStack\n",
      "\n",
      "█████████████████████████████████████████████████████████████\n",
      "\n",
      "\n",
      "Looking for: ['trimmomatic', 'fastqc', 'bowtie', 'samtools', 'rsem', 'multiqc']\n",
      "\n",
      "\u001b[?25l\u001b[2K\u001b[0G[+] 0.0s\n",
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      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\n",
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      "bioconda/linux-64    \u001b[33m━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\n",
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      "conda-forge/noarch   \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m   2.2MB /  ??.?MB @   3.2MB/s  0.7s\n",
      "bioconda/linux-64    \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   1.2MB /  ??.?MB @   1.8MB/s  0.7s\n",
      "bioconda/noarch      \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   1.8MB /  ??.?MB @   2.6MB/s  0.7s\n",
      "pkgs/main/linux-64   \u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━\u001b[0m   2.2MB /  ??.?MB @   3.3MB/s  0.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 0.8s\n",
      "conda-forge/linux-64 \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   2.6MB /  ??.?MB @   3.3MB/s  0.8s\n",
      "conda-forge/noarch   \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m   2.7MB /  ??.?MB @   3.4MB/s  0.8s\n",
      "bioconda/linux-64    \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m   1.5MB /  ??.?MB @   2.0MB/s  0.8s\n",
      "bioconda/noarch      \u001b[90m━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━\u001b[0m   2.2MB /  ??.?MB @   2.8MB/s  0.8s\n",
      "pkgs/main/linux-64   \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   2.7MB /  ??.?MB @   3.4MB/s  0.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 0.9s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   3.2MB /  ??.?MB @   3.6MB/s  0.9s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━\u001b[0m   3.2MB /  ??.?MB @   3.6MB/s  0.9s\n",
      "bioconda/linux-64    \u001b[90m━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━\u001b[0m   1.8MB /  ??.?MB @   2.1MB/s  0.9s\n",
      "bioconda/noarch      \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   2.6MB /  ??.?MB @   3.0MB/s  0.9s\n",
      "pkgs/main/linux-64   \u001b[90m━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m   3.2MB /  ??.?MB @   3.6MB/s  0.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.0s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━\u001b[0m   3.7MB /  ??.?MB @   3.7MB/s  1.0s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━\u001b[0m   3.7MB /  ??.?MB @   3.7MB/s  1.0s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m   2.1MB /  ??.?MB @   2.2MB/s  1.0s\n",
      "bioconda/noarch      \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m   3.0MB /  ??.?MB @   3.0MB/s  1.0s\n",
      "pkgs/main/linux-64   \u001b[90m━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━\u001b[0m   3.7MB /  ??.?MB @   3.8MB/s  1.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.1s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   4.2MB /  ??.?MB @   3.8MB/s  1.1s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   4.2MB /  ??.?MB @   3.8MB/s  1.1s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   2.4MB /  ??.?MB @   2.2MB/s  1.1s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━\u001b[0m   3.3MB /  ??.?MB @   3.1MB/s  1.1s\n",
      "pkgs/main/linux-64   \u001b[90m━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━\u001b[0m   4.3MB /  ??.?MB @   3.9MB/s  1.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.2s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m   4.7MB /  ??.?MB @   3.9MB/s  1.2s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   4.7MB /  ??.?MB @   3.9MB/s  1.2s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m   2.7MB /  ??.?MB @   2.3MB/s  1.2s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m   3.7MB /  ??.?MB @   3.2MB/s  1.2s\n",
      "pkgs/main/linux-64   \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   4.8MB /  ??.?MB @   4.0MB/s  1.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.3s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.9MB/s  1.3s\n",
      "conda-forge/noarch   \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   5.0MB /  ??.?MB @   4.0MB/s  1.3s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   2.8MB /  ??.?MB @   2.3MB/s  1.3s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   3.9MB /  ??.?MB @   3.2MB/s  1.3s\n",
      "pkgs/main/linux-64   \u001b[90m━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━\u001b[0m   5.0MB /  ??.?MB @   4.0MB/s  1.3s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.4s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.9MB/s  1.4s\n",
      "conda-forge/noarch   \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   5.0MB /  ??.?MB @   4.0MB/s  1.4s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   2.8MB /  ??.?MB @   2.3MB/s  1.4s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   3.9MB /  ??.?MB @   3.2MB/s  1.4s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.5s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.9MB/s  1.5s\n",
      "conda-forge/noarch   \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   5.0MB /  ??.?MB @   4.0MB/s  1.5s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   2.8MB /  ??.?MB @   2.3MB/s  1.5s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   3.9MB /  ??.?MB @   3.2MB/s  1.5s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.6s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.9MB/s  1.6s\n",
      "conda-forge/noarch   \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   5.0MB /  ??.?MB @   4.0MB/s  1.6s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   2.8MB /  ??.?MB @   2.3MB/s  1.6s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   3.9MB /  ??.?MB @   3.2MB/s  1.6s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpkgs/main/linux-64                                   5.1MB @   4.1MB/s  1.4s\n",
      "[+] 1.7s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.0MB/s  1.7s\n",
      "conda-forge/noarch   \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   5.0MB /  ??.?MB @   3.0MB/s  1.7s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   2.9MB /  ??.?MB @   1.8MB/s  1.7s\n",
      "bioconda/noarch      \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   4.0MB /  ??.?MB @   2.4MB/s  1.7s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.0s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━\u001b[0m  12.3kB /  ??.?MB @   7.5kB/s  0.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.8s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.0MB/s  1.8s\n",
      "conda-forge/noarch   \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   5.0MB /  ??.?MB @   3.0MB/s  1.8s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   2.9MB /  ??.?MB @   1.8MB/s  1.8s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━\u001b[0m  12.3kB /  ??.?MB @   7.5kB/s  0.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 1.9s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.0MB/s  1.9s\n",
      "conda-forge/noarch   \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   5.0MB /  ??.?MB @   3.0MB/s  1.9s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   2.9MB /  ??.?MB @   1.8MB/s  1.9s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.2s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━\u001b[0m  12.3kB /  ??.?MB @   7.5kB/s  0.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.0s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m   4.9MB /  ??.?MB @   3.0MB/s  2.0s\n",
      "conda-forge/noarch   \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   5.0MB /  ??.?MB @   3.0MB/s  2.0s\n",
      "bioconda/linux-64    \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   2.9MB /  ??.?MB @   1.8MB/s  2.0s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.3s\n",
      "pkgs/r/noarch        \u001b[90m━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━\u001b[0m  12.3kB /  ??.?MB @   7.5kB/s  0.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gbioconda/noarch                                      4.1MB @   2.5MB/s  1.8s\n",
      "[+] 2.1s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m   5.3MB /  ??.?MB @   2.6MB/s  2.1s\n",
      "conda-forge/noarch   \u001b[90m━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m   5.5MB /  ??.?MB @   2.7MB/s  2.1s\n",
      "bioconda/linux-64    \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   3.4MB /  ??.?MB @   1.7MB/s  2.1s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.2s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m   5.3MB /  ??.?MB @   2.6MB/s  2.2s\n",
      "conda-forge/noarch   \u001b[90m━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m   5.5MB /  ??.?MB @   2.7MB/s  2.2s\n",
      "bioconda/linux-64    \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   3.4MB /  ??.?MB @   1.7MB/s  2.2s\n",
      "pkgs/main/noarch     \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpkgs/r/noarch                                        1.3MB @ 628.6kB/s  0.8s\n",
      "[+] 2.3s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   5.4MB /  ??.?MB @   2.4MB/s  2.3s\n",
      "conda-forge/noarch   \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   5.7MB /  ??.?MB @   2.5MB/s  2.3s\n",
      "bioconda/linux-64    \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   3.6MB /  ??.?MB @   1.6MB/s  2.3s\n",
      "pkgs/main/noarch     \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m  30.0kB /  ??.?MB @  13.5kB/s  0.6s\n",
      "pkgs/r/linux-64      \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.4s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   5.4MB /  ??.?MB @   2.4MB/s  2.4s\n",
      "conda-forge/noarch   \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   5.7MB /  ??.?MB @   2.5MB/s  2.4s\n",
      "bioconda/linux-64    \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m   3.6MB /  ??.?MB @   1.6MB/s  2.4s\n",
      "pkgs/main/noarch     \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m  30.0kB /  ??.?MB @  13.5kB/s  0.7s\n",
      "pkgs/r/linux-64      \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.5s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   5.4MB @   2.4MB/s             2.5s\n",
      "conda-forge/noarch   \u001b[90m━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   5.7MB @   2.5MB/s             2.5s\n",
      "bioconda/linux-64    ━━━━━━━━━━━━━━━━━━━━━━   4.5MB @   2.0MB/s Finalizing  2.5s\n",
      "pkgs/main/noarch     \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━\u001b[0m  30.0kB @  13.5kB/s             0.8s\n",
      "pkgs/r/linux-64      \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m   0.0 B @  ??.?MB/s             0.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.6s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   5.4MB /  ??.?MB @   2.4MB/s  2.6s\n",
      "conda-forge/noarch   \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   5.7MB /  ??.?MB @   2.5MB/s  2.6s\n",
      "pkgs/main/noarch     \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m  30.0kB /  ??.?MB @  13.5kB/s  0.9s\n",
      "pkgs/r/linux-64      \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 2.7s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m   5.4MB /  ??.?MB @   2.4MB/s  2.7s\n",
      "conda-forge/noarch   \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m   5.7MB /  ??.?MB @   2.5MB/s  2.7s\n",
      "pkgs/main/noarch     \u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m  30.0kB /  ??.?MB @  13.5kB/s  1.0s\n",
      "pkgs/r/linux-64      \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m   0.0 B /  ??.?MB @  ??.?MB/s  0.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gbioconda/linux-64                                  @   2.0MB/s  2.5s\n",
      "[+] 2.8s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m   6.0MB /  ??.?MB @   2.2MB/s  2.8s\n",
      "conda-forge/noarch   \u001b[90m━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━\u001b[0m   6.3MB /  ??.?MB @   2.3MB/s  2.8s\n",
      "pkgs/r/linux-64      \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m 131.1kB /  ??.?MB @  47.9kB/s  0.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpkgs/main/noarch                                   818.6kB @ 297.3kB/s  1.1s\n",
      "[+] 2.9s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m   6.4MB /  ??.?MB @   2.3MB/s  2.9s\n",
      "conda-forge/noarch   \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m   6.6MB /  ??.?MB @   2.3MB/s  2.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpkgs/r/linux-64                                      1.4MB @ 497.6kB/s  0.7s\n",
      "[+] 3.0s\n",
      "conda-forge/linux-64 \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m   8.3MB /  ??.?MB @   2.8MB/s  3.0s\n",
      "conda-forge/noarch   \u001b[90m━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━\u001b[0m   8.5MB /  ??.?MB @   2.8MB/s  3.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.1s\n",
      "conda-forge/linux-64 \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m   9.3MB /  ??.?MB @   3.0MB/s  3.1s\n",
      "conda-forge/noarch   \u001b[90m━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━\u001b[0m   9.3MB /  ??.?MB @   3.0MB/s  3.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.2s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━\u001b[0m   9.8MB /  ??.?MB @   3.1MB/s  3.2s\n",
      "conda-forge/noarch   \u001b[90m━━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━\u001b[0m   9.7MB /  ??.?MB @   3.0MB/s  3.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.3s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━\u001b[0m  10.4MB /  ??.?MB @   3.2MB/s  3.3s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m  10.2MB /  ??.?MB @   3.1MB/s  3.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.4s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.4s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  10.7MB /  ??.?MB @   3.2MB/s  3.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.5s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.5s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  10.7MB /  ??.?MB @   3.2MB/s  3.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.6s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.6s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  10.7MB /  ??.?MB @   3.2MB/s  3.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.7s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.7s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  10.7MB /  ??.?MB @   3.2MB/s  3.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.8s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.8s\n",
      "conda-forge/noarch   \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  10.7MB /  ??.?MB @   3.2MB/s  3.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.9s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  3.9s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.0s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  4.0s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.1s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  4.1s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.2s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━\u001b[0m  10.9MB /  ??.?MB @   3.2MB/s  4.2s\u001b[2K\u001b[1A\u001b[2K\u001b[0Gconda-forge/noarch                                  10.7MB @   3.2MB/s  3.9s\n",
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      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  13.3MB /  ??.?MB @   3.0MB/s  4.4s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.5s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m  13.8MB /  ??.?MB @   3.1MB/s  4.5s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.6s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m  14.3MB /  ??.?MB @   3.1MB/s  4.6s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.7s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m  14.8MB /  ??.?MB @   3.2MB/s  4.7s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.8s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━\u001b[0m  15.3MB /  ??.?MB @   3.2MB/s  4.8s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.9s\n",
      "conda-forge/linux-64 \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m  15.8MB /  ??.?MB @   3.2MB/s  4.9s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.0s\n",
      "conda-forge/linux-64 \u001b[90m━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━\u001b[0m  16.2MB /  ??.?MB @   3.2MB/s  5.0s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.1s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m  16.7MB /  ??.?MB @   3.3MB/s  5.1s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.2s\n",
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      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━\u001b[0m  17.8MB /  ??.?MB @   3.4MB/s  5.3s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.4s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  18.4MB /  ??.?MB @   3.4MB/s  5.4s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.5s\n",
      "conda-forge/linux-64 \u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m  18.9MB /  ??.?MB @   3.4MB/s  5.5s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.6s\n",
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      "conda-forge/linux-64 \u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m  19.7MB /  ??.?MB @   3.5MB/s  5.7s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.8s\n",
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      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.3s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.4s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.4s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.5s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.5s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.6s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.6s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.7s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.7s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.8s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.8s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.9s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  8.9s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.0s\n",
      "conda-forge/linux-64 \u001b[90m━━━━━━━━━━━━╸\u001b[0m\u001b[33m━━━━━━━━━━\u001b[0m  28.6MB /  ??.?MB @   3.8MB/s  9.0s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.1s\n",
      "conda-forge/linux-64 ━━━━━━━━━━━━━━━━━━━━━━  28.8MB @   3.8MB/s Finalizing  9.1s\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.2s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.3s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.4s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.5s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.6s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.7s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.8s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.9s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.0s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.1s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.2s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.3s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.4s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.5s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.6s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.7s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.8s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.9s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.0s\n",
      "\u001b[2K\u001b[1A\u001b[2K\u001b[0Gconda-forge/linux-64                               @   3.8MB/s  9.2s\n",
      "\u001b[?25h\n",
      "Pinned packages:\n",
      "  - python 3.7.*\n",
      "\n",
      "\n",
      "Transaction\n",
      "\n",
      "  Prefix: /opt/conda\n",
      "\n",
      "  Updating specs:\n",
      "\n",
      "   - trimmomatic\n",
      "   - fastqc\n",
      "   - bowtie\n",
      "   - samtools\n",
      "   - rsem\n",
      "   - multiqc\n",
      "   - ca-certificates\n",
      "   - certifi\n",
      "   - openssl\n",
      "\n",
      "\n",
      "  Package                       Version  Build                 Channel                    Size\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "  Install:\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[32m  + _r-mutex                 \u001b[00m     1.0.1  anacondar_1           conda-forge/noarch          4kB\n",
      "\u001b[32m  + alsa-lib                 \u001b[00m     1.2.8  h166bdaf_0            conda-forge/linux-64      592kB\n",
      "\u001b[32m  + binutils_impl_linux-64   \u001b[00m      2.39  he00db2b_1            conda-forge/linux-64        5MB\n",
      "\u001b[32m  + bioconductor-biobase     \u001b[00m    2.58.0  r42hc0cfd56_0         bioconda/linux-64           2MB\n",
      "\u001b[32m  + bioconductor-biocgenerics\u001b[00m    0.44.0  r42hdfd78af_0         bioconda/noarch           665kB\n",
      "\u001b[32m  + bioconductor-ebseq       \u001b[00m    1.38.0  r42hdfd78af_0         bioconda/noarch             1MB\n",
      "\u001b[32m  + bottleneck               \u001b[00m     1.3.5  py37hda87dfa_0        conda-forge/linux-64      129kB\n",
      "\u001b[32m  + bowtie                   \u001b[00m     1.3.1  py37h24c3a67_4        bioconda/linux-64         972kB\n",
      "\u001b[32m  + brotli                   \u001b[00m     1.0.9  h166bdaf_8            conda-forge/linux-64       19kB\n",
      "\u001b[32m  + brotli-bin               \u001b[00m     1.0.9  h166bdaf_8            conda-forge/linux-64       20kB\n",
      "\u001b[32m  + bwidget                  \u001b[00m    1.9.14  ha770c72_1            conda-forge/linux-64      122kB\n",
      "\u001b[32m  + cairo                    \u001b[00m    1.16.0  ha61ee94_1014         conda-forge/linux-64        2MB\n",
      "\u001b[32m  + click                    \u001b[00m     8.1.3  py37h89c1867_0        conda-forge/linux-64      148kB\n",
      "\u001b[32m  + coloredlogs              \u001b[00m    15.0.1  pyhd8ed1ab_3          conda-forge/noarch         41kB\n",
      "\u001b[32m  + colormath                \u001b[00m     3.0.0  py_2                  conda-forge/noarch         35kB\n",
      "\u001b[32m  + commonmark               \u001b[00m     0.9.1  py_0                  conda-forge/noarch         47kB\n",
      "\u001b[32m  + cycler                   \u001b[00m    0.11.0  pyhd8ed1ab_0          conda-forge/noarch         10kB\n",
      "\u001b[32m  + dataclasses              \u001b[00m       0.8  pyhc8e2a94_3          conda-forge/noarch         10kB\n",
      "\u001b[32m  + fastqc                   \u001b[00m    0.11.9  hdfd78af_1            bioconda/noarch            10MB\n",
      "\u001b[32m  + font-ttf-dejavu-sans-mono\u001b[00m      2.37  hab24e00_0            conda-forge/noarch        397kB\n",
      "\u001b[32m  + font-ttf-inconsolata     \u001b[00m     3.000  h77eed37_0            conda-forge/noarch         97kB\n",
      "\u001b[32m  + font-ttf-source-code-pro \u001b[00m     2.038  h77eed37_0            conda-forge/noarch        701kB\n",
      "\u001b[32m  + font-ttf-ubuntu          \u001b[00m      0.83  hab24e00_0            conda-forge/noarch          2MB\n",
      "\u001b[32m  + fontconfig               \u001b[00m    2.14.1  hc2a2eb6_0            conda-forge/linux-64      374kB\n",
      "\u001b[32m  + fonts-conda-ecosystem    \u001b[00m         1  0                     conda-forge/noarch          4kB\n",
      "\u001b[32m  + fonts-conda-forge        \u001b[00m         1  0                     conda-forge/noarch          4kB\n",
      "\u001b[32m  + fonttools                \u001b[00m    4.38.0  py37h540881e_0        conda-forge/linux-64        2MB\n",
      "\u001b[32m  + freetype                 \u001b[00m    2.12.1  hca18f0e_1            conda-forge/linux-64      626kB\n",
      "\u001b[32m  + fribidi                  \u001b[00m    1.0.10  h36c2ea0_0            conda-forge/linux-64      114kB\n",
      "\u001b[32m  + future                   \u001b[00m    0.18.2  py37h89c1867_5        conda-forge/linux-64      730kB\n",
      "\u001b[32m  + gcc_impl_linux-64        \u001b[00m    12.2.0  hcc96c02_19           conda-forge/linux-64       59MB\n",
      "\u001b[32m  + gfortran_impl_linux-64   \u001b[00m    12.2.0  h55be85b_19           conda-forge/linux-64       17MB\n",
      "\u001b[32m  + giflib                   \u001b[00m     5.2.1  h36c2ea0_2            conda-forge/linux-64       79kB\n",
      "\u001b[32m  + graphite2                \u001b[00m    1.3.13  h58526e2_1001         conda-forge/linux-64      105kB\n",
      "\u001b[32m  + gsl                      \u001b[00m       2.7  he838d99_0            conda-forge/linux-64        3MB\n",
      "\u001b[32m  + gxx_impl_linux-64        \u001b[00m    12.2.0  hcc96c02_19           conda-forge/linux-64       15MB\n",
      "\u001b[32m  + harfbuzz                 \u001b[00m     6.0.0  h8e241bc_0            conda-forge/linux-64        1MB\n",
      "\u001b[32m  + htslib                   \u001b[00m      1.16  h6bc39ce_0            bioconda/linux-64           2MB\n",
      "\u001b[32m  + humanfriendly            \u001b[00m      10.0  py37h89c1867_2        conda-forge/linux-64      121kB\n",
      "\u001b[32m  + jpeg                     \u001b[00m        9e  h166bdaf_2            conda-forge/linux-64      275kB\n",
      "\u001b[32m  + kernel-headers_linux-64  \u001b[00m    2.6.32  he073ed8_15           conda-forge/noarch        724kB\n",
      "\u001b[32m  + kiwisolver               \u001b[00m     1.4.4  py37h7cecad7_0        conda-forge/linux-64       75kB\n",
      "\u001b[32m  + lcms2                    \u001b[00m      2.14  h6ed2654_0            conda-forge/linux-64      262kB\n",
      "\u001b[32m  + lerc                     \u001b[00m     4.0.0  h27087fc_0            conda-forge/linux-64      282kB\n",
      "\u001b[32m  + libblas                  \u001b[00m     3.9.0  16_linux64_openblas   conda-forge/linux-64       13kB\n",
      "\u001b[32m  + libbrotlicommon          \u001b[00m     1.0.9  h166bdaf_8            conda-forge/linux-64       67kB\n",
      "\u001b[32m  + libbrotlidec             \u001b[00m     1.0.9  h166bdaf_8            conda-forge/linux-64       34kB\n",
      "\u001b[32m  + libbrotlienc             \u001b[00m     1.0.9  h166bdaf_8            conda-forge/linux-64      295kB\n",
      "\u001b[32m  + libcblas                 \u001b[00m     3.9.0  16_linux64_openblas   conda-forge/linux-64       13kB\n",
      "\u001b[32m  + libcups                  \u001b[00m     2.3.3  h36d4200_3            conda-forge/linux-64        5MB\n",
      "\u001b[32m  + libdeflate               \u001b[00m      1.13  h166bdaf_0            conda-forge/linux-64       80kB\n",
      "\u001b[32m  + libgcc-devel_linux-64    \u001b[00m    12.2.0  h3b97bd3_19           conda-forge/linux-64        4MB\n",
      "\u001b[32m  + libgfortran-ng           \u001b[00m    12.2.0  h69a702a_19           conda-forge/linux-64       23kB\n",
      "\u001b[32m  + libgfortran5             \u001b[00m    12.2.0  h337968e_19           conda-forge/linux-64        2MB\n",
      "\u001b[32m  + libglib                  \u001b[00m    2.74.1  h606061b_1            conda-forge/linux-64        3MB\n",
      "\u001b[32m  + libhwloc                 \u001b[00m     2.8.0  h32351e8_1            conda-forge/linux-64        3MB\n",
      "\u001b[32m  + liblapack                \u001b[00m     3.9.0  16_linux64_openblas   conda-forge/linux-64       13kB\n",
      "\u001b[32m  + libopenblas              \u001b[00m    0.3.21  pthreads_h78a6416_3   conda-forge/linux-64       11MB\n",
      "\u001b[32m  + libpng                   \u001b[00m    1.6.39  h753d276_0            conda-forge/linux-64      283kB\n",
      "\u001b[32m  + libsanitizer             \u001b[00m    12.2.0  h46fd767_19           conda-forge/linux-64        6MB\n",
      "\u001b[32m  + libstdcxx-devel_linux-64 \u001b[00m    12.2.0  h3b97bd3_19           conda-forge/linux-64       10MB\n",
      "\u001b[32m  + libtiff                  \u001b[00m     4.4.0  h0e0dad5_3            conda-forge/linux-64      658kB\n",
      "\u001b[32m  + libuuid                  \u001b[00m    2.32.1  h7f98852_1000         conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + libwebp-base             \u001b[00m     1.2.4  h166bdaf_0            conda-forge/linux-64      413kB\n",
      "\u001b[32m  + libxcb                   \u001b[00m      1.13  h7f98852_1004         conda-forge/linux-64      400kB\n",
      "\u001b[32m  + libxml2                  \u001b[00m    2.10.3  h7463322_0            conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\u001b[32m  + lzstring                 \u001b[00m     1.0.4  py_1001               conda-forge/noarch          6kB\n",
      "\u001b[32m  + make                     \u001b[00m       4.3  hd18ef5c_1            conda-forge/linux-64      519kB\n",
      "\u001b[32m  + markdown                 \u001b[00m     3.4.1  pyhd8ed1ab_0          conda-forge/noarch         66kB\n",
      "\u001b[32m  + matplotlib-base          \u001b[00m     3.5.3  py37hf395dca_2        conda-forge/linux-64        8MB\n",
      "\u001b[32m  + multiqc                  \u001b[00m      1.13  pyhdfd78af_0          bioconda/noarch           973kB\n",
      "\u001b[32m  + munkres                  \u001b[00m     1.1.4  pyh9f0ad1d_0          conda-forge/noarch         12kB\n",
      "\u001b[32m  + mysql-connector-c        \u001b[00m    6.1.11  h6eb9d5d_1007         conda-forge/linux-64        3MB\n",
      "\u001b[32m  + networkx                 \u001b[00m       2.7  pyhd8ed1ab_0          conda-forge/noarch          2MB\n",
      "\u001b[32m  + nomkl                    \u001b[00m       1.0  h5ca1d4c_0            conda-forge/noarch          4kB\n",
      "\u001b[32m  + numexpr                  \u001b[00m     2.8.3  py37h85a3170_100      conda-forge/linux-64      137kB\n",
      "\u001b[32m  + numpy                    \u001b[00m    1.21.6  py37h976b520_0        conda-forge/linux-64        6MB\n",
      "\u001b[32m  + openjdk                  \u001b[00m    17.0.3  h58dac75_5            conda-forge/linux-64      169MB\n",
      "\u001b[32m  + openjpeg                 \u001b[00m     2.5.0  h7d73246_1            conda-forge/linux-64      546kB\n",
      "\u001b[32m  + pandas                   \u001b[00m     1.3.5  py37h8c16a72_0        pkgs/main/linux-64         10MB\n",
      "\u001b[32m  + pango                    \u001b[00m   1.50.12  hd33c08f_1            conda-forge/linux-64      437kB\n",
      "\u001b[32m  + perl-inc-latest          \u001b[00m     0.500  pl5321ha770c72_0      conda-forge/linux-64       16kB\n",
      "\u001b[32m  + perl-module-build        \u001b[00m    0.4232  pl5321ha770c72_0      conda-forge/linux-64      136kB\n",
      "\u001b[32m  + pillow                   \u001b[00m     9.2.0  py37h850a105_2        conda-forge/linux-64       47MB\n",
      "\u001b[32m  + pixman                   \u001b[00m    0.40.0  h36c2ea0_0            conda-forge/linux-64      643kB\n",
      "\u001b[32m  + pthread-stubs            \u001b[00m       0.4  h36c2ea0_1001         conda-forge/linux-64        6kB\n",
      "\u001b[32m  + pyparsing                \u001b[00m     3.0.9  pyhd8ed1ab_0          conda-forge/noarch         81kB\n",
      "\u001b[32m  + pytz                     \u001b[00m    2022.7  pyhd8ed1ab_0          conda-forge/noarch        186kB\n",
      "\u001b[32m  + pyyaml                   \u001b[00m       6.0  py37h540881e_4        conda-forge/linux-64      182kB\n",
      "\u001b[32m  + r-backports              \u001b[00m     1.4.1  r42h06615bd_1         conda-forge/linux-64      113kB\n",
      "\u001b[32m  + r-base                   \u001b[00m     4.2.2  h6b4767f_2            conda-forge/linux-64       25MB\n",
      "\u001b[32m  + r-bitops                 \u001b[00m     1.0_7  r42h06615bd_1         conda-forge/linux-64       46kB\n",
      "\u001b[32m  + r-blockmodeling          \u001b[00m     1.1.4  r42h8da6f51_0         conda-forge/linux-64      438kB\n",
      "\u001b[32m  + r-brio                   \u001b[00m     1.1.3  r42h06615bd_1         conda-forge/linux-64       42kB\n",
      "\u001b[32m  + r-callr                  \u001b[00m     3.7.3  r42hc72bb7e_0         conda-forge/noarch        439kB\n",
      "\u001b[32m  + r-catools                \u001b[00m    1.18.2  r42h7525677_1         conda-forge/linux-64      228kB\n",
      "\u001b[32m  + r-cli                    \u001b[00m     3.5.0  r42h38f115c_1         conda-forge/linux-64        1MB\n",
      "\u001b[32m  + r-crayon                 \u001b[00m     1.5.2  r42hc72bb7e_1         conda-forge/noarch        172kB\n",
      "\u001b[32m  + r-desc                   \u001b[00m     1.4.2  r42hc72bb7e_1         conda-forge/noarch        340kB\n",
      "\u001b[32m  + r-diffobj                \u001b[00m     0.3.5  r42h06615bd_1         conda-forge/linux-64        1MB\n",
      "\u001b[32m  + r-digest                 \u001b[00m    0.6.31  r42h38f115c_0         conda-forge/linux-64      189kB\n",
      "\u001b[32m  + r-ellipsis               \u001b[00m     0.3.2  r42h06615bd_1         conda-forge/linux-64       44kB\n",
      "\u001b[32m  + r-evaluate               \u001b[00m      0.19  r42hc72bb7e_0         conda-forge/noarch         87kB\n",
      "\u001b[32m  + r-fansi                  \u001b[00m     1.0.3  r42h06615bd_1         conda-forge/linux-64      331kB\n",
      "\u001b[32m  + r-fs                     \u001b[00m     1.5.2  r42h7525677_2         conda-forge/linux-64      575kB\n",
      "\u001b[32m  + r-glue                   \u001b[00m     1.6.2  r42h06615bd_1         conda-forge/linux-64      158kB\n",
      "\u001b[32m  + r-gplots                 \u001b[00m     3.1.3  r42hc72bb7e_1         conda-forge/noarch        618kB\n",
      "\u001b[32m  + r-gtools                 \u001b[00m     3.9.4  r42h06615bd_0         conda-forge/linux-64      363kB\n",
      "\u001b[32m  + r-jsonlite               \u001b[00m     1.8.4  r42h133d619_0         conda-forge/linux-64      634kB\n",
      "\u001b[32m  + r-kernsmooth             \u001b[00m   2.23_20  r42hd009a43_1         conda-forge/linux-64      104kB\n",
      "\u001b[32m  + r-lattice                \u001b[00m   0.20_45  r42h06615bd_1         conda-forge/linux-64        1MB\n",
      "\u001b[32m  + r-lifecycle              \u001b[00m     1.0.3  r42hc72bb7e_1         conda-forge/noarch        128kB\n",
      "\u001b[32m  + r-magrittr               \u001b[00m     2.0.3  r42h06615bd_1         conda-forge/linux-64      221kB\n",
      "\u001b[32m  + r-matrix                 \u001b[00m     1.5_3  r42h5f7b363_0         conda-forge/linux-64        4MB\n",
      "\u001b[32m  + r-pillar                 \u001b[00m     1.8.1  r42hc72bb7e_1         conda-forge/noarch        694kB\n",
      "\u001b[32m  + r-pkgconfig              \u001b[00m     2.0.3  r42hc72bb7e_2         conda-forge/noarch         27kB\n",
      "\u001b[32m  + r-pkgload                \u001b[00m     1.3.2  r42hc72bb7e_0         conda-forge/noarch        199kB\n",
      "\u001b[32m  + r-praise                 \u001b[00m     1.0.0  r42hc72bb7e_1006      conda-forge/noarch         25kB\n",
      "\u001b[32m  + r-processx               \u001b[00m     3.8.0  r42h06615bd_0         conda-forge/linux-64      339kB\n",
      "\u001b[32m  + r-ps                     \u001b[00m     1.7.2  r42h06615bd_0         conda-forge/linux-64      331kB\n",
      "\u001b[32m  + r-r6                     \u001b[00m     2.5.1  r42hc72bb7e_1         conda-forge/noarch         93kB\n",
      "\u001b[32m  + r-rematch2               \u001b[00m     2.1.2  r42hc72bb7e_2         conda-forge/noarch         55kB\n",
      "\u001b[32m  + r-rlang                  \u001b[00m     1.0.6  r42h7525677_1         conda-forge/linux-64        2MB\n",
      "\u001b[32m  + r-rprojroot              \u001b[00m     2.0.3  r42hc72bb7e_1         conda-forge/noarch        118kB\n",
      "\u001b[32m  + r-testthat               \u001b[00m     3.1.6  r42h38f115c_0         conda-forge/linux-64        2MB\n",
      "\u001b[32m  + r-tibble                 \u001b[00m     3.1.8  r42h06615bd_1         conda-forge/linux-64      710kB\n",
      "\u001b[32m  + r-utf8                   \u001b[00m     1.2.2  r42h06615bd_1         conda-forge/linux-64      167kB\n",
      "\u001b[32m  + r-vctrs                  \u001b[00m     0.5.1  r42h7525677_0         conda-forge/linux-64        1MB\n",
      "\u001b[32m  + r-waldo                  \u001b[00m     0.4.0  r42hc72bb7e_1         conda-forge/noarch        113kB\n",
      "\u001b[32m  + r-withr                  \u001b[00m     2.5.0  r42hc72bb7e_1         conda-forge/noarch        246kB\n",
      "\u001b[32m  + rich                     \u001b[00m    13.0.0  pyhd8ed1ab_0          conda-forge/noarch        182kB\n",
      "\u001b[32m  + rich-click               \u001b[00m     1.6.0  pyhd8ed1ab_0          conda-forge/noarch         23kB\n",
      "\u001b[32m  + rsem                     \u001b[00m     1.3.3  pl5321ha04fe3b_5      bioconda/linux-64         540kB\n",
      "\u001b[32m  + samtools                 \u001b[00m    1.16.1  h6899075_1            bioconda/linux-64         421kB\n",
      "\u001b[32m  + scipy                    \u001b[00m     1.7.3  py37hf2a6cf1_0        conda-forge/linux-64       23MB\n",
      "\u001b[32m  + sed                      \u001b[00m       4.8  he412f7d_0            conda-forge/linux-64      271kB\n",
      "\u001b[32m  + simplejson               \u001b[00m    3.17.6  py37h540881e_1        conda-forge/linux-64      106kB\n",
      "\u001b[32m  + spectra                  \u001b[00m    0.0.11  py_1                  conda-forge/noarch         19kB\n",
      "\u001b[32m  + sysroot_linux-64         \u001b[00m      2.12  he073ed8_15           conda-forge/noarch         33MB\n",
      "\u001b[32m  + tbb                      \u001b[00m  2021.7.0  h924138e_1            conda-forge/linux-64        2MB\n",
      "\u001b[32m  + tktable                  \u001b[00m      2.10  hb7b940f_3            conda-forge/linux-64       92kB\n",
      "\u001b[32m  + trimmomatic              \u001b[00m      0.39  hdfd78af_2            bioconda/noarch           147kB\n",
      "\u001b[32m  + typing-extensions        \u001b[00m     4.4.0  hd8ed1ab_0            conda-forge/noarch          9kB\n",
      "\u001b[32m  + ucsc-bigwigsummary       \u001b[00m       377  ha8a8165_3            bioconda/linux-64         160kB\n",
      "\u001b[32m  + unicodedata2             \u001b[00m    14.0.0  py37h540881e_1        conda-forge/linux-64      508kB\n",
      "\u001b[32m  + xorg-fixesproto          \u001b[00m       5.0  h7f98852_1002         conda-forge/linux-64        9kB\n",
      "\u001b[32m  + xorg-inputproto          \u001b[00m     2.3.2  h7f98852_1002         conda-forge/linux-64       20kB\n",
      "\u001b[32m  + xorg-kbproto             \u001b[00m     1.0.7  h7f98852_1002         conda-forge/linux-64       27kB\n",
      "\u001b[32m  + xorg-libice              \u001b[00m    1.0.10  h7f98852_0            conda-forge/linux-64       59kB\n",
      "\u001b[32m  + xorg-libsm               \u001b[00m     1.2.3  hd9c2040_1000         conda-forge/linux-64       26kB\n",
      "\u001b[32m  + xorg-libx11              \u001b[00m     1.7.2  h7f98852_0            conda-forge/linux-64      963kB\n",
      "\u001b[32m  + xorg-libxau              \u001b[00m     1.0.9  h7f98852_0            conda-forge/linux-64       13kB\n",
      "\u001b[32m  + xorg-libxdmcp            \u001b[00m     1.1.3  h7f98852_0            conda-forge/linux-64       19kB\n",
      "\u001b[32m  + xorg-libxext             \u001b[00m     1.3.4  h7f98852_1            conda-forge/linux-64       55kB\n",
      "\u001b[32m  + xorg-libxfixes           \u001b[00m     5.0.3  h7f98852_1004         conda-forge/linux-64       18kB\n",
      "\u001b[32m  + xorg-libxi               \u001b[00m    1.7.10  h7f98852_0            conda-forge/linux-64       47kB\n",
      "\u001b[32m  + xorg-libxrender          \u001b[00m    0.9.10  h7f98852_1003         conda-forge/linux-64       33kB\n",
      "\u001b[32m  + xorg-libxt               \u001b[00m     1.2.1  h7f98852_2            conda-forge/linux-64      384kB\n",
      "\u001b[32m  + xorg-libxtst             \u001b[00m     1.2.3  h7f98852_1002         conda-forge/linux-64       32kB\n",
      "\u001b[32m  + xorg-recordproto         \u001b[00m    1.14.2  h7f98852_1002         conda-forge/linux-64        8kB\n",
      "\u001b[32m  + xorg-renderproto         \u001b[00m    0.11.1  h7f98852_1002         conda-forge/linux-64       10kB\n",
      "\u001b[32m  + xorg-xextproto           \u001b[00m     7.3.0  h7f98852_1002         conda-forge/linux-64       28kB\n",
      "\u001b[32m  + xorg-xproto              \u001b[00m    7.0.31  h7f98852_1007         conda-forge/linux-64       75kB\n",
      "\u001b[32m  + zstd                     \u001b[00m     1.5.2  h6239696_4            conda-forge/linux-64\u001b[32m     Cached\u001b[00m\n",
      "\n",
      "  Change:\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[31m  - cryptography             \u001b[00m    38.0.2  py37h5994e8b_1        conda-forge                    \n",
      "\u001b[32m  + cryptography             \u001b[00m    38.0.2  py37h38fbfac_1        conda-forge/linux-64        2MB\n",
      "\u001b[31m  - git                      \u001b[00m    2.39.0  pl5321h693f4a3_0      conda-forge                    \n",
      "\u001b[32m  + git                      \u001b[00m    2.39.0  pl5321ha3eba64_0      conda-forge/linux-64       10MB\n",
      "\u001b[31m  - krb5                     \u001b[00m    1.20.1  h81ceb04_0            conda-forge                    \n",
      "\u001b[32m  + krb5                     \u001b[00m    1.20.1  hf9c8cef_0            conda-forge/linux-64        1MB\n",
      "\u001b[31m  - libnghttp2               \u001b[00m    1.47.0  hff17c54_1            conda-forge                    \n",
      "\u001b[32m  + libnghttp2               \u001b[00m    1.47.0  hdcd2b5c_1            conda-forge/linux-64      828kB\n",
      "\u001b[31m  - libssh2                  \u001b[00m    1.10.0  hf14f497_3            conda-forge                    \n",
      "\u001b[32m  + libssh2                  \u001b[00m    1.10.0  haa6b8db_3            conda-forge/linux-64      239kB\n",
      "\u001b[31m  - nodejs                   \u001b[00m   18.12.1  h8839609_0            conda-forge                    \n",
      "\u001b[32m  + nodejs                   \u001b[00m   18.12.1  h96d913c_0            conda-forge/linux-64       17MB\n",
      "\u001b[31m  - python                   \u001b[00m    3.7.12  hf930737_100_cpython  conda-forge                    \n",
      "\u001b[32m  + python                   \u001b[00m    3.7.12  hb7a2778_100_cpython  conda-forge/linux-64       60MB\n",
      "\n",
      "  Upgrade:\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[31m  - curl                     \u001b[00m    7.86.0  hdc1c0ab_2            conda-forge                    \n",
      "\u001b[32m  + curl                     \u001b[00m    7.87.0  h6312ad2_0            conda-forge/linux-64       88kB\n",
      "\u001b[31m  - libcurl                  \u001b[00m    7.86.0  hdc1c0ab_2            conda-forge                    \n",
      "\u001b[32m  + libcurl                  \u001b[00m    7.87.0  h6312ad2_0            conda-forge/linux-64      347kB\n",
      "\n",
      "  Downgrade:\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[31m  - openssl                  \u001b[00m     3.0.7  h0b41bf4_1            conda-forge                    \n",
      "\u001b[32m  + openssl                  \u001b[00m    1.1.1s  h0b41bf4_1            conda-forge/linux-64        2MB\n",
      "\n",
      "  Summary:\n",
      "\n",
      "  Install: 164 packages\n",
      "  Change: 7 packages\n",
      "  Upgrade: 2 packages\n",
      "  Downgrade: 1 packages\n",
      "\n",
      "  Total download: 625MB\n",
      "\n",
      "────────────────────────────────────────────────────────────────────────────────────────────────\n",
      "\n",
      "\u001b[?25l\u001b[2K\u001b[0G[+] 0.0s\n",
      "Downloading      \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m   0.0 B                            0.0s\n",
      "Extracting       \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m       0                            0.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 0.1s\n",
      "Downloading  (5) \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m   0.0 B lerc                       0.0s\n",
      "Extracting       \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m       0                            0.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibdeflate                                          80.4kB @ 515.8kB/s  0.2s\n",
      "libpng                                             282.6kB @   1.7MB/s  0.2s\n",
      "lerc                                               281.8kB @   1.6MB/s  0.2s\n",
      "libglib                                              3.3MB @  17.8MB/s  0.2s\n",
      "[+] 0.2s\n",
      "Downloading  (5) \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m   4.2MB fribidi                    0.1s\n",
      "Extracting   (2) \u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m       2 lerc                       0.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gmake                                               518.9kB @   2.5MB/s  0.0s\n",
      "fribidi                                            114.4kB @ 527.9kB/s  0.0s\n",
      "pixman                                             642.5kB @   2.7MB/s  0.1s\n",
      "xorg-libice                                         59.4kB @ 244.4kB/s  0.0s\n",
      "xorg-inputproto                                     19.6kB @  78.9kB/s  0.0s\n",
      "openssl                                              2.0MB @   7.6MB/s  0.3s\n",
      "xorg-libxdmcp                                       19.1kB @  71.6kB/s  0.0s\n",
      "xorg-xextproto                                      28.3kB @ 102.3kB/s  0.0s\n",
      "[+] 0.3s\n",
      "Downloading  (5) \u001b[33m╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━━━━━━\u001b[0m   8.9MB krb5                       0.2s\n",
      "Extracting   (9) \u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━\u001b[0m       3 fribidi                    0.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibbrotlidec                                        34.2kB @ 111.6kB/s  0.0s\n",
      "krb5                                                 1.3MB @   3.9MB/s  0.1s\n",
      "libxcb                                             399.9kB @   1.2MB/s  0.0s\n",
      "pyyaml                                             182.0kB @ 483.4kB/s  0.0s\n",
      "perl-module-build                                  136.3kB @ 352.3kB/s  0.1s\n",
      "[+] 0.4s\n",
      "Downloading  (5) \u001b[33m╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━━━━━━\u001b[0m  13.4MB fontconfig                 0.3s\n",
      "Extracting  (14) \u001b[90m╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m       3 fribidi                    0.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gfontconfig                                         374.2kB @ 896.5kB/s  0.0s\n",
      "libcups                                              4.5MB @  10.1MB/s  0.1s\n",
      "xorg-libx11                                        963.4kB @   2.1MB/s  0.0s\n",
      "humanfriendly                                      121.3kB @ 257.4kB/s  0.1s\n",
      "xorg-libxfixes                                      18.1kB @  38.2kB/s  0.0s\n",
      "curl                                                88.2kB @ 182.7kB/s  0.0s\n",
      "[+] 0.5s\n",
      "Downloading  (5) \u001b[33m━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━━━━━\u001b[0m  29.6MB gsl                        0.4s\n",
      "Extracting  (20) \u001b[90m━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m       3 fribidi                    0.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibcblas                                            12.8kB @  25.4kB/s  0.0s\n",
      "nodejs                                              17.1MB @  33.2MB/s  0.3s\n",
      "xorg-libxt                                         383.8kB @ 732.4kB/s  0.1s\n",
      "bottleneck                                         129.2kB @ 244.5kB/s  0.0s\n",
      "gsl                                                  3.4MB @   6.2MB/s  0.1s\n",
      "font-ttf-inconsolata                                96.5kB @ 174.5kB/s  0.0s\n",
      "nomkl                                                3.8kB @   6.9kB/s  0.0s\n",
      "_r-mutex                                             3.6kB @   6.4kB/s  0.0s\n",
      "markdown                                            66.2kB @ 114.2kB/s  0.0s\n",
      "pyparsing                                           81.3kB @ 139.8kB/s  0.0s\n",
      "rich                                               182.4kB @ 308.5kB/s  0.0s\n",
      "[+] 0.6s\n",
      "Downloading  (5) ╸\u001b[33m━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━━━━\u001b[0m  46.2MB fonttools                  0.5s\n",
      "Extracting  (30) \u001b[90m━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m       4 fribidi                    0.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibstdcxx-devel_linux-64                            10.4MB @  17.3MB/s  0.4s\n",
      "samtools                                           420.8kB @ 677.1kB/s  0.0s\n",
      "fonttools                                            2.0MB @   3.2MB/s  0.0s\n",
      "lzstring                                             6.2kB @   9.0kB/s  0.1s\n",
      "[+] 0.7s\n",
      "Downloading  (5) ╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m  53.4MB gfortran_impl_linux-64     0.6s\n",
      "Extracting  (32) \u001b[90m━━━╸\u001b[0m\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m       6 _r-mutex                   0.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-backports                                        113.2kB @ 155.4kB/s  0.0s\n",
      "r-fansi                                            331.0kB @ 434.8kB/s  0.0s\n",
      "[+] 0.8s\n",
      "Downloading  (5) ━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━\u001b[0m  77.9MB gfortran_impl_linux-64     0.7s\n",
      "Extracting  (27) ╸\u001b[33m━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━━\u001b[0m      13 _r-mutex                   0.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gucsc-bigwigsummary                                 160.2kB @ 195.1kB/s  0.2s\n",
      "gfortran_impl_linux-64                              17.5MB @  21.2MB/s  0.2s\n",
      "r-brio                                              41.9kB @  49.0kB/s  0.0s\n",
      "r-jsonlite                                         633.7kB @ 715.5kB/s  0.1s\n",
      "r-catools                                          228.3kB @ 256.4kB/s  0.0s\n",
      "[+] 0.9s\n",
      "Downloading  (5) ━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m 103.4MB matplotlib-base            0.8s\n",
      "Extracting  (28) ━╸\u001b[33m━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━\u001b[0m      17 _r-mutex                   0.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gmatplotlib-base                                      7.7MB @   8.0MB/s  0.4s\n",
      "r-withr                                            245.9kB @ 246.4kB/s  0.0s\n",
      "[+] 1.0s\n",
      "Downloading  (5) ━━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m 123.3MB openjdk                    0.9s\n",
      "Extracting  (29) ━╸\u001b[33m━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━\u001b[0m      18 _r-mutex                   0.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gtrimmomatic                                        147.4kB @ 147.4kB/s  0.1s\n",
      "r-evaluate                                          86.6kB @  83.0kB/s  0.0s\n",
      "r-lifecycle                                        128.1kB @ 122.8kB/s  0.0s\n",
      "r-ps                                               331.2kB @ 307.0kB/s  0.3s\n",
      "spectra                                             19.4kB @  18.0kB/s  0.0s\n",
      "[+] 1.1s\n",
      "Downloading  (5) ━━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m 136.4MB openjdk                    1.0s\n",
      "Extracting  (28) ━━╸\u001b[33m━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━━\u001b[0m      24 bottleneck                 0.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-callr                                            439.1kB @ 387.5kB/s  0.1s\n",
      "r-rematch2                                          54.9kB @  47.1kB/s  0.0s\n",
      "r-blockmodeling                                    438.1kB @ 373.3kB/s  0.3s\n",
      "[+] 1.2s\n",
      "Downloading  (5) ━━━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m 156.0MB openjdk                    1.1s\n",
      "Extracting  (30) ━━╸\u001b[33m━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m      25 bottleneck                 1.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gperl-inc-latest                                     16.0kB @  12.6kB/s  0.1s\n",
      "[+] 1.3s\n",
      "Downloading  (5) ━━━━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m 172.4MB openjdk                    1.2s\n",
      "Extracting  (31) ━━╸\u001b[33m━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━━\u001b[0m      25 bottleneck                 1.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-desc                                             340.3kB @ 260.6kB/s  0.3s\n",
      "libwebp-base                                       413.4kB @ 306.5kB/s  0.0s\n",
      "bioconductor-ebseq                                   1.4MB @   1.0MB/s  0.2s\n",
      "tktable                                             91.5kB @  66.2kB/s  0.0s\n",
      "xorg-recordproto                                     8.0kB @   5.8kB/s  0.0s\n",
      "[+] 1.4s\n",
      "Downloading  (5) ━━━━━╸\u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━\u001b[0m 189.6MB r-diffobj                  1.3s\n",
      "Extracting  (36) ━━╸\u001b[33m━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━━\u001b[0m      25 bottleneck                 1.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gxorg-renderproto                                     9.6kB @   6.7kB/s  0.0s\n",
      "libsanitizer                                         6.5MB @   4.5MB/s  0.2s\n",
      "libgfortran-ng                                      22.9kB @  15.7kB/s  0.0s\n",
      "mysql-connector-c                                    2.8MB @   1.9MB/s  0.1s\n",
      "libnghttp2                                         827.7kB @ 556.1kB/s  0.1s\n",
      "xorg-fixesproto                                      9.1kB @   6.1kB/s  0.0s\n",
      "simplejson                                         105.8kB @  70.9kB/s  0.0s\n",
      "[+] 1.5s\n",
      "Downloading  (5) ━━━━━━╸\u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m 212.0MB r-diffobj                  1.4s\n",
      "Extracting  (43) ━━╸\u001b[33m━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m      25 font-ttf-inconsolata       1.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glcms2                                              262.1kB @ 172.8kB/s  0.0s\n",
      "xorg-libxext                                        54.9kB @  35.6kB/s  0.0s\n",
      "cryptography                                         1.6MB @   1.0MB/s  0.1s\n",
      "libopenblas                                         10.6MB @   6.7MB/s  0.1s\n",
      "[+] 1.6s\n",
      "Downloading  (5) ━━━━━━━╸\u001b[33m━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m 240.9MB r-diffobj                  1.5s\n",
      "Extracting  (47) ━━╸\u001b[33m━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━━\u001b[0m      25 font-ttf-inconsolata       1.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gfont-ttf-dejavu-sans-mono                          397.4kB @ 245.5kB/s  0.0s\n",
      "git                                                  9.6MB @   5.9MB/s  0.1s\n",
      "font-ttf-source-code-pro                           700.8kB @ 425.2kB/s  0.0s\n",
      "r-diffobj                                            1.1MB @ 644.3kB/s  0.6s\n",
      "coloredlogs                                         40.6kB @  24.1kB/s  0.0s\n",
      "munkres                                             12.5kB @   7.4kB/s  0.1s\n",
      "[+] 1.7s\n",
      "Downloading  (5) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━\u001b[0m 263.5MB gcc_impl_linux-64          1.6s\n",
      "Extracting  (53) ━━╸\u001b[33m━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━━\u001b[0m      25 font-ttf-inconsolata       1.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gfonts-conda-forge                                    4.1kB @   2.4kB/s  0.0s\n",
      "numexpr                                            137.0kB @  79.3kB/s  0.0s\n",
      "htslib                                               2.4MB @   1.4MB/s  0.1s\n",
      "pango                                              436.8kB @ 246.7kB/s  0.0s\n",
      "numpy                                                6.4MB @   3.6MB/s  0.2s\n",
      "[+] 1.8s\n",
      "Downloading  (5) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m 292.0MB gcc_impl_linux-64          1.7s\n",
      "Extracting  (58) ━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m      25 font-ttf-inconsolata       1.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-digest                                           189.0kB @ 104.5kB/s  0.0s\n",
      "r-lattice                                            1.2MB @ 655.4kB/s  0.1s\n",
      "r-gtools                                           363.5kB @ 194.7kB/s  0.1s\n",
      "openjdk                                            168.8MB @  89.2MB/s  1.3s\n",
      "r-pkgconfig                                         26.6kB @  14.0kB/s  0.0s\n",
      "[+] 1.9s\n",
      "Downloading  (5) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m 311.8MB gcc_impl_linux-64          1.8s\n",
      "Extracting  (63) ━━╸\u001b[33m━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━━\u001b[0m      25 font-ttf-source-code-pro   1.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-rprojroot                                        118.2kB @  61.0kB/s  0.0s\n",
      "r-processx                                         339.5kB @ 170.4kB/s  0.1s\n",
      "[+] 2.0s\n",
      "Downloading  (5) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m 335.9MB gcc_impl_linux-64          1.9s\n",
      "Extracting  (65) ━━╸\u001b[33m━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━━\u001b[0m      25 font-ttf-source-code-pro   1.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpandas                                               9.7MB @   4.9MB/s  0.2s\n",
      "colormath                                           35.3kB @  17.4kB/s  0.1s\n",
      "r-pillar                                           693.5kB @ 341.1kB/s  0.0s\n",
      "r-fs                                               575.0kB @ 279.1kB/s  0.3s\n",
      "bwidget                                            122.5kB @  59.3kB/s  0.0s\n",
      "libgfortran5                                         1.8MB @ 885.0kB/s  0.0s\n",
      "graphite2                                          104.7kB @  50.2kB/s  0.0s\n",
      "pthread-stubs                                        5.6kB @   2.7kB/s  0.0s\n",
      "[+] 2.1s\n",
      "Downloading  (5) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m 358.4MB libbrotlienc               2.0s\n",
      "Extracting  (73) ━━╸\u001b[33m━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━━\u001b[0m      25 font-ttf-source-code-pro   1.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibssh2                                            239.5kB @ 113.7kB/s  0.0s\n",
      "libbrotlienc                                       295.2kB @ 139.8kB/s  0.0s\n",
      "unicodedata2                                       508.2kB @ 239.1kB/s  0.0s\n",
      "gcc_impl_linux-64                                   59.0MB @  27.7MB/s  0.4s\n",
      "libcurl                                            347.4kB @ 162.8kB/s  0.0s\n",
      "openjpeg                                           546.2kB @ 253.9kB/s  0.0s\n",
      "xorg-libxi                                          47.3kB @  21.9kB/s  0.0s\n",
      "xorg-libxrender                                     32.9kB @  15.2kB/s  0.0s\n",
      "r-testthat                                           1.6MB @ 723.3kB/s  0.2s\n",
      "kernel-headers_linux-64                            723.9kB @ 333.7kB/s  0.0s\n",
      "pytz                                               186.3kB @  85.6kB/s  0.0s\n",
      "commonmark                                          47.4kB @  21.7kB/s  0.0s\n",
      "[+] 2.2s\n",
      "Downloading  (5) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m 372.3MB binutils_impl_linux-64     2.1s\n",
      "Extracting  (85) ━━╸\u001b[33m━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━━\u001b[0m      25 font-ttf-source-code-pro   2.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-glue                                             158.1kB @  71.9kB/s  0.0s\n",
      "r-magrittr                                         220.7kB @  99.8kB/s  0.0s\n",
      "bioconductor-biocgenerics                          664.5kB @ 295.9kB/s  0.0s\n",
      "r-matrix                                             4.5MB @   2.0MB/s  0.1s\n",
      "rich-click                                          22.6kB @  10.0kB/s  0.1s\n",
      "r-crayon                                           171.9kB @  75.6kB/s  0.0s\n",
      "gxx_impl_linux-64                                   14.6MB @   6.4MB/s  0.1s\n",
      "[+] 2.3s\n",
      "Downloading  (5) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m 394.3MB binutils_impl_linux-64     2.2s\n",
      "Extracting  (92) ━━╸\u001b[33m━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━━\u001b[0m      25 fonts-conda-forge          2.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gjpeg                                               275.1kB @ 118.3kB/s  0.0s\n",
      "giflib                                              79.3kB @  33.5kB/s  0.0s\n",
      "binutils_impl_linux-64                               4.9MB @   2.1MB/s  0.2s\n",
      "r-pkgload                                          198.7kB @  83.1kB/s  0.1s\n",
      "xorg-libxau                                         13.4kB @   5.6kB/s  0.0s\n",
      "[+] 2.4s\n",
      "Downloading  (5) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m 398.0MB brotli-bin                 2.3s\n",
      "Extracting  (97) ━━╸\u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━━\u001b[0m      25 fonts-conda-forge          2.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gfuture                                             729.9kB @ 301.2kB/s  0.0s\n",
      "brotli-bin                                          20.1kB @   8.3kB/s  0.0s\n",
      "freetype                                           625.7kB @ 257.0kB/s  0.1s\n",
      "cycler                                              10.3kB @   4.2kB/s  0.0s\n",
      "rsem                                               540.5kB @ 218.5kB/s  0.2s\n",
      "fonts-conda-ecosystem                                3.7kB @   1.5kB/s  0.0s\n",
      "[+] 2.5s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m 405.5MB cairo                      2.4s\n",
      "Extracting  (103) ━━╸\u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m      25 fonts-conda-forge          2.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gcairo                                                1.6MB @ 628.4kB/s  0.0s\n",
      "r-utf8                                             167.5kB @  66.2kB/s  0.0s\n",
      "r-cli                                                1.2MB @ 477.9kB/s  0.0s\n",
      "multiqc                                            972.8kB @ 378.5kB/s  0.3s\n",
      "[+] 2.6s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━\u001b[0m 436.5MB fastqc                     2.5s\n",
      "Extracting  (107) ━━╸\u001b[33m━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━━\u001b[0m      25 fonts-conda-forge          2.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-vctrs                                              1.3MB @ 502.7kB/s  0.0s\n",
      "alsa-lib                                           592.3kB @ 224.6kB/s  0.0s\n",
      "sed                                                270.8kB @ 101.6kB/s  0.0s\n",
      "scipy                                               22.8MB @   8.5MB/s  0.3s\n",
      "[+] 2.7s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m 466.9MB fastqc                     2.6s\n",
      "Extracting  (111) ━━╸\u001b[33m━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━━\u001b[0m      25 fonttools                  2.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Glibtiff                                            657.5kB @ 242.2kB/s  0.0s\n",
      "libblas                                             12.9kB @   4.7kB/s  0.0s\n",
      "pillow                                              47.2MB @  17.1MB/s  0.3s\n",
      "fastqc                                              10.2MB @   3.7MB/s  0.2s\n",
      "dataclasses                                          9.9kB @   3.5kB/s  0.0s\n",
      "xorg-libxtst                                        32.1kB @  11.5kB/s  0.0s\n",
      "[+] 2.8s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━\u001b[0m 497.6MB kiwisolver                 2.7s\n",
      "Extracting  (117) ━━╸\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m      25 fonttools                  2.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gkiwisolver                                          74.5kB @  26.6kB/s  0.0s\n",
      "r-ellipsis                                          43.5kB @  15.5kB/s  0.0s\n",
      "networkx                                             1.6MB @ 566.7kB/s  0.0s\n",
      "xorg-kbproto                                        27.3kB @   9.5kB/s  0.0s\n",
      "r-bitops                                            45.7kB @  15.8kB/s  0.1s\n",
      "[+] 2.9s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m 522.1MB brotli                     2.8s\n",
      "Extracting  (122) ━━╸\u001b[33m━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━━━\u001b[0m      25 fonttools                  2.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gxorg-libsm                                          26.4kB @   9.1kB/s  0.0s\n",
      "brotli                                              18.9kB @   6.5kB/s  0.0s\n",
      "r-waldo                                            112.7kB @  38.5kB/s  0.1s\n",
      "font-ttf-ubuntu                                      2.0MB @ 667.4kB/s  0.0s\n",
      "harfbuzz                                             1.3MB @ 441.0kB/s  0.0s\n",
      "r-kernsmooth                                       103.9kB @  35.2kB/s  0.0s\n",
      "libbrotlicommon                                     67.2kB @  22.6kB/s  0.0s\n",
      "click                                              148.0kB @  49.7kB/s  0.0s\n",
      "typing-extensions                                    8.6kB @   2.9kB/s  0.0s\n",
      "[+] 3.0s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m 543.3MB bioconductor-biobase       2.9s\n",
      "Extracting  (131) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━╸\u001b[0m\u001b[90m━\u001b[0m      25 fonttools                  2.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gpython                                              60.1MB @  20.0MB/s  0.3s\n",
      "r-praise                                            25.1kB @   8.2kB/s  0.0s\n",
      "xorg-xproto                                         74.9kB @  24.6kB/s  0.0s\n",
      "r-gplots                                           618.2kB @ 203.3kB/s  0.5s\n",
      "liblapack                                           12.8kB @   4.2kB/s  0.0s\n",
      "bioconductor-biobase                                 2.5MB @ 808.7kB/s  0.1s\n",
      "r-rlang                                              1.6MB @ 503.8kB/s  0.0s\n",
      "libgcc-devel_linux-64                                3.5MB @   1.1MB/s  0.0s\n",
      "[+] 3.1s\n",
      "Downloading  (5)  ━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m 574.2MB bowtie                     3.0s\n",
      "Extracting  (135) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      29 freetype                   2.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gr-tibble                                           710.4kB @ 227.2kB/s  0.0s\n",
      "tbb                                                  1.6MB @ 498.0kB/s  0.0s\n",
      "r-r6                                                92.6kB @  29.3kB/s  0.0s\n",
      "r-base                                              25.1MB @   7.9MB/s  0.2s\n",
      "libhwloc                                             3.1MB @ 975.3kB/s  0.1s\n",
      "[+] 3.2s\n",
      "Downloading  (2)  ━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m 599.4MB bowtie                     3.1s\n",
      "Extracting  (140) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      29 freetype                   3.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gsysroot_linux-64                                    32.9MB @  10.0MB/s  0.2s\n",
      "[+] 3.3s\n",
      "Downloading  (1)  ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m 624.4MB bowtie                     3.2s\n",
      "Extracting  (141) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      29 freetype                   3.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.4s\n",
      "Downloading  (1)  ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m 625.0MB bowtie                     3.3s\n",
      "Extracting  (139) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      31 freetype                   3.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0Gbowtie                                             971.6kB @ 282.8kB/s  0.3s\n",
      "[+] 3.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (140) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      31 future                     3.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (140) ━━╸\u001b[33m━━━━━━━━━━━━━━━━━━━\u001b[0m      31 future                     3.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 future                     3.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 future                     3.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 3.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gcc_impl_linux-64          3.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gcc_impl_linux-64          3.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gcc_impl_linux-64          3.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gcc_impl_linux-64          4.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gfortran_impl_linux-64     4.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gfortran_impl_linux-64     4.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (138) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      33 gfortran_impl_linux-64     4.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (137) ━━━╸\u001b[33m━━━━━━━━━━━━━━━━━━\u001b[0m      34 gfortran_impl_linux-64     4.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 giflib                     4.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 giflib                     4.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 4.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 giflib                     4.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 giflib                     4.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 git                        4.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 git                        5.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 git                        5.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 git                        5.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 graphite2                  5.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 graphite2                  5.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 graphite2                  5.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 graphite2                  5.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 5.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 gxx_impl_linux-64          5.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 gxx_impl_linux-64          5.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (131) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      40 gxx_impl_linux-64          5.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 gxx_impl_linux-64          6.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 harfbuzz                   6.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 harfbuzz                   6.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 harfbuzz                   6.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 harfbuzz                   6.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 htslib                     6.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (130) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      41 htslib                     6.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 6.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (129) ━━━━╸\u001b[33m━━━━━━━━━━━━━━━━━\u001b[0m      42 htslib                     6.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (123) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      49 htslib                     6.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (117) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      54 jpeg                       6.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (117) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      54 jpeg                       7.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (117) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      54 jpeg                       7.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (117) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      54 jpeg                       7.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (117) ━━━━━╸\u001b[33m━━━━━━━━━━━━━━━━\u001b[0m      54 kernel-headers_linux-64    7.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (116) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      55 kernel-headers_linux-64    7.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (115) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      56 kernel-headers_linux-64    7.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (115) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      56 kernel-headers_linux-64    7.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 7.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (115) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      56 kiwisolver                 7.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (115) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      56 kiwisolver                 7.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (115) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      56 kiwisolver                 7.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (114) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      57 kiwisolver                 8.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (110) ━━━━━━╸\u001b[33m━━━━━━━━━━━━━━━\u001b[0m      61 lcms2                      8.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (108) ━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      63 lcms2                      8.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (106) ━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      65 lcms2                      8.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (104) ━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      67 lcms2                      8.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libblas                    8.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libblas                    8.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 8.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libblas                    8.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libblas                    8.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.1s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libbrotlienc               8.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.2s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libbrotlienc               9.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.3s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libbrotlienc               9.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.4s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libbrotlienc               9.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.5s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libcurl                    9.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.6s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libcurl                    9.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.7s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libcurl                    9.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.8s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libcurl                    9.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 9.9s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (101) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      70 libgcc-devel_linux-64      9.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.0s\n",
      "Downloading       ━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (100) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      71 libgcc-devel_linux-64      9.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (99) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      72 libgcc-devel_linux-64      9.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (98) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      73 libgcc-devel_linux-64     10.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (97) ━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━━\u001b[0m      74 libgfortran-ng            10.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (95) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      76 libgfortran-ng            10.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (94) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      77 libgfortran-ng            10.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 libgfortran-ng            10.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 libhwloc                  10.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 libhwloc                  10.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 10.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 libhwloc                  10.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 libhwloc                  10.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 liblapack                 10.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (92) ━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━━\u001b[0m      79 liblapack                 11.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (89) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      82 liblapack                 11.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (89) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      82 liblapack                 11.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (89) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      82 libopenblas               11.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (87) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      84 libopenblas               11.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (84) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      87 libopenblas               11.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (84) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      87 libopenblas               11.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 11.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (82) ━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━━\u001b[0m      89 multiqc                   11.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (81) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      90 multiqc                   11.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 multiqc                   11.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 multiqc                   12.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 mysql-connector-c         12.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 mysql-connector-c         12.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 mysql-connector-c         12.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 mysql-connector-c         12.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 numexpr                   12.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 numexpr                   12.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 12.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 numexpr                   12.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 numexpr                   12.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 openjdk                   12.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 openjdk                   13.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 openjdk                   13.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 openjdk                   13.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pango                     13.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pango                     13.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pango                     13.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pango                     13.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 13.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pillow                    13.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pillow                    13.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pillow                    13.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pillow                    14.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pthread-stubs             14.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pthread-stubs             14.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pthread-stubs             14.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 pthread-stubs             14.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 python                    14.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 python                    14.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 14.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (79) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      92 python                    14.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (78) ━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━━\u001b[0m      93 python                    14.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 pytz                      14.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 pytz                      15.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 pytz                      15.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 pytz                      15.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-base                    15.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-base                    15.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-base                    15.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-base                    15.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 15.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-brio                    15.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-brio                    15.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-brio                    15.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-brio                    16.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-callr                   16.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-callr                   16.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-callr                   16.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-callr                   16.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-cli                     16.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-cli                     16.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 16.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-cli                     16.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-cli                     16.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-digest                  16.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-digest                  17.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-digest                  17.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-digest                  17.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-fs                      17.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-fs                      17.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-fs                      17.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-fs                      17.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 17.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-glue                    17.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-glue                    17.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-glue                    17.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-glue                    18.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gplots                  18.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gplots                  18.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gplots                  18.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gplots                  18.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gtools                  18.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gtools                  18.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 18.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gtools                  18.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-gtools                  18.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (74) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      97 r-lattice                 18.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (73) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      98 r-lattice                 19.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (73) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      98 r-lattice                 19.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (73) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      98 r-lattice                 19.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (73) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      98 r-matrix                  19.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (73) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m      98 r-matrix                  19.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (71) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m     100 r-matrix                  19.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (70) ━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━━\u001b[0m     101 r-matrix                  19.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 19.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pillar                  19.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pillar                  19.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pillar                  19.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pillar                  20.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgconfig               20.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgconfig               20.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgconfig               20.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgconfig               20.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgload                 20.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgload                 20.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 20.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (66) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     105 r-pkgload                 20.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (62) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     109 r-pkgload                 20.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (60) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     111 r-r6                      20.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (60) ━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━━\u001b[0m     111 r-r6                      21.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-r6                      21.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-r6                      21.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rematch2                21.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rematch2                21.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rematch2                21.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rematch2                21.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 21.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rprojroot               21.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rprojroot               21.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rprojroot               21.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-rprojroot               22.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-tibble                  22.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-tibble                  22.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-tibble                  22.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-tibble                  22.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-utf8                    22.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-utf8                    22.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 22.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-utf8                    22.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-utf8                    22.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-vctrs                   22.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-vctrs                   23.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-vctrs                   23.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-vctrs                   23.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-waldo                   23.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-waldo                   23.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-waldo                   23.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 r-waldo                   23.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 23.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 scipy                     23.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 scipy                     23.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 scipy                     23.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 scipy                     24.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sed                       24.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sed                       24.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sed                       24.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sed                       24.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sysroot_linux-64          24.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sysroot_linux-64          24.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 24.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sysroot_linux-64          24.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 sysroot_linux-64          24.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 tbb                       24.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 tbb                       25.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 tbb                       25.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 tbb                       25.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 unicodedata2              25.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 unicodedata2              25.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 unicodedata2              25.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 unicodedata2              25.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 25.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-fixesproto           25.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-fixesproto           25.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-fixesproto           25.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-fixesproto           26.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-kbproto              26.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (59) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     112 xorg-kbproto              26.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (56) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     115 xorg-kbproto              26.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (53) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     118 binutils_impl_linux-64    26.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (53) ━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━━\u001b[0m     118 binutils_impl_linux-64    26.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (51) ━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━\u001b[0m     120 binutils_impl_linux-64    26.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 26.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (48) ━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━\u001b[0m     123 binutils_impl_linux-64    26.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (47) ━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━\u001b[0m     124 bioconductor-biobase      26.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (46) ━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━━\u001b[0m     125 binutils_impl_linux-64    26.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 binutils_impl_linux-64    27.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 binutils_impl_linux-64    27.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 binutils_impl_linux-64    27.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 coloredlogs               27.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 coloredlogs               27.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 coloredlogs               27.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 coloredlogs               27.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 27.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 colormath                 27.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 colormath                 27.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 colormath                 27.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 colormath                 28.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 commonmark                28.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 commonmark                28.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 commonmark                28.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 commonmark                28.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 dataclasses               28.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 dataclasses               28.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 28.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 dataclasses               28.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 dataclasses               28.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 font-ttf-dejavu-sans-mono 28.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (43) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     128 font-ttf-dejavu-sans-mono 29.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (40) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     131 font-ttf-dejavu-sans-mono 29.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (40) ━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━━\u001b[0m     131 font-ttf-dejavu-sans-mono 29.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (35) ━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━\u001b[0m     136 font-ttf-source-code-pro  29.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (32) ━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━━\u001b[0m     139 font-ttf-source-code-pro  29.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-source-code-pro  29.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-source-code-pro  29.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 29.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-ubuntu           29.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-ubuntu           29.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-ubuntu           29.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 font-ttf-ubuntu           30.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 fonts-conda-ecosystem     30.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 fonts-conda-ecosystem     30.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 fonts-conda-ecosystem     30.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 fonts-conda-ecosystem     30.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 lcms2                     30.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 lcms2                     30.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 30.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 lcms2                     30.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 lcms2                     30.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 mysql-connector-c         30.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 mysql-connector-c         31.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 mysql-connector-c         31.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 mysql-connector-c         31.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 numexpr                   31.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 numexpr                   31.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 numexpr                   31.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 numexpr                   31.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 31.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 pytz                      31.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 pytz                      31.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 pytz                      31.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 pytz                      32.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (25) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     146 r-base                    32.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (24) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     147 r-base                    32.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (24) ━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━━\u001b[0m     147 r-base                    32.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.6s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (19) ━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━\u001b[0m     152 r-base                    32.4s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.7s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (16) ━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━━\u001b[0m     155 r-brio                    32.5s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.8s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (12) ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m     159 binutils_impl_linux-64    32.6s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 32.9s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting  (10) ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m     161 font-ttf-dejavu-sans-mono 32.7s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.0s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (8) ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m     163 font-ttf-dejavu-sans-mono 32.8s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.1s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (8) ━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━━\u001b[0m     163 font-ttf-dejavu-sans-mono 32.9s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.2s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (5) ━━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m     166 font-ttf-dejavu-sans-mono 33.0s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.3s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (2) ━━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m     169 r-matrix                  33.1s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.4s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (2) ━━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m     169 r-matrix                  33.2s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G[+] 33.5s\n",
      "Downloading      ━━━━━━━━━━━━━━━━━━━━━━━ 625.4MB                            3.4s\n",
      "Extracting   (2) ━━━━━━━━━━━━━━━━━━━━━╸\u001b[33m━\u001b[0m     169 r-matrix                  33.3s\u001b[2K\u001b[1A\u001b[2K\u001b[1A\u001b[2K\u001b[0G\u001b[?25hPreparing transaction: done\n",
      "Verifying transaction: done\n",
      "Executing transaction: done\n"
     ]
    }
   ],
   "source": [
    "#Mambaforge\n",
    "!curl -L -O https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-$(uname)-$(uname -m).sh\n",
    "!bash Mambaforge-$(uname)-$(uname -m).sh -b -u -p $HOME/mambaforge\n",
    "\n",
    "#Trimmomatic, Fastqc, bowtie, samtools, rsem\n",
    "!$HOME/mambaforge/bin/mamba install -y -c conda-forge -c bioconda trimmomatic fastqc bowtie samtools rsem multiqc"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "ab298b90-0f0f-468e-adf3-d6c74a8f9614",
   "metadata": {},
   "source": [
    "# Download Files\n",
    "\n",
    "We need to create the folders we will use, as well as download the fastq and reference files that will be used for analysis. \n",
    "\n",
    "In this particular case, this notebook and the next notebook will only be looking at the 24 hour post injection IAV and HBSS 'spotless' zebrafish samples.\n",
    "\n",
    "The 24 hour run IDs are :\n",
    "\n",
    "\n",
    "SA161918 (HBSS)\n",
    "SA161919 (HBSS)\n",
    "SA161920 (HBSS)\n",
    "SA161921 (HBSS)\n",
    "SA161922 (IAV)\n",
    "SA161923 (IAV)\n",
    "SA161924 (IAV)\n",
    "SA161878 (IAV)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "812b935a-5e24-4d4d-8a86-245a17b1fb2e",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Copying gs://hon_350/fastq/SE8161_SA161878_S1_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8161_SA161878_S1_L007_R2_001.fastq.gz...           \n",
      "\\ [2 files][  2.6 GiB/  2.6 GiB]  298.5 MiB/s                                   \n",
      "Operation completed over 2 objects/2.6 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161918_S9_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161918_S9_L007_R2_001.fastq.gz...           \n",
      "\\ [2 files][  2.6 GiB/  2.6 GiB]  142.5 MiB/s                                   \n",
      "Operation completed over 2 objects/2.6 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161919_S10_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161919_S10_L007_R2_001.fastq.gz...          \n",
      "/ [2 files][  2.6 GiB/  2.6 GiB]  122.8 MiB/s                                   \n",
      "Operation completed over 2 objects/2.6 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161920_S11_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161920_S11_L007_R2_001.fastq.gz...          \n",
      "- [2 files][  2.6 GiB/  2.6 GiB]  137.4 MiB/s                                   \n",
      "Operation completed over 2 objects/2.6 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161921_S12_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161921_S12_L007_R2_001.fastq.gz...          \n",
      "/ [2 files][  2.4 GiB/  2.4 GiB]  150.0 MiB/s                                   \n",
      "Operation completed over 2 objects/2.4 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161922_S13_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161922_S13_L007_R2_001.fastq.gz...          \n",
      "\\ [2 files][  2.7 GiB/  2.7 GiB]  258.3 MiB/s                                   \n",
      "Operation completed over 2 objects/2.7 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161923_S14_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161923_S14_L007_R2_001.fastq.gz...          \n",
      "/ [2 files][  2.8 GiB/  2.8 GiB]  165.2 MiB/s                                   \n",
      "Operation completed over 2 objects/2.8 GiB.                                      \n",
      "Copying gs://hon_350/fastq/SE8159_SA161924_S15_L007_R1_001.fastq.gz...\n",
      "Copying gs://hon_350/fastq/SE8159_SA161924_S15_L007_R2_001.fastq.gz...          \n",
      "- [2 files][  2.5 GiB/  2.5 GiB]  152.7 MiB/s                                   \n",
      "Operation completed over 2 objects/2.5 GiB.                                      \n",
      "Copying gs://hon_350/reference/TruSeq3-PE.fa...\n",
      "/ [1 files][   93.0 B/   93.0 B]                                                \n",
      "Operation completed over 1 objects/93.0 B.                                       \n",
      "Copying gs://hon_350/reference/rsem_grcz11.108_transcriptome.tar.gz...\n",
      "| [1 files][207.0 MiB/207.0 MiB]                                                \n",
      "Operation completed over 1 objects/207.0 MiB.                                    \n",
      "unzipping...\n",
      "data/reference/zebrafish_rsem/\n",
      "data/reference/zebrafish_rsem/GRCz11_108.4.ebwt\n",
      "data/reference/zebrafish_rsem/GRCz11_108.chrlist\n",
      "data/reference/zebrafish_rsem/GRCz11_108.2.ebwt\n",
      "data/reference/zebrafish_rsem/.ipynb_checkpoints/\n",
      "data/reference/zebrafish_rsem/GRCz11_108.n2g.idx.fa\n",
      "data/reference/zebrafish_rsem/GRCz11_108.seq\n",
      "data/reference/zebrafish_rsem/GRCz11_108.1.ebwt\n",
      "data/reference/zebrafish_rsem/GRCz11_108.rev.1.ebwt\n",
      "data/reference/zebrafish_rsem/GRCz11_108.grp\n",
      "data/reference/zebrafish_rsem/GRCz11_108.idx.fa\n",
      "data/reference/zebrafish_rsem/GRCz11_108.rev.2.ebwt\n",
      "data/reference/zebrafish_rsem/GRCz11_108.ti\n",
      "data/reference/zebrafish_rsem/GRCz11_108.transcripts.fa\n",
      "data/reference/zebrafish_rsem/GRCz11_108.3.ebwt\n",
      "finished unzipping.\n"
     ]
    }
   ],
   "source": [
    "## Create Directories to hold files\n",
    "!mkdir -p data\n",
    "!mkdir -p data/raw_fastq\n",
    "!mkdir -p data/trimmed\n",
    "!mkdir -p data/fastqc\n",
    "!mkdir -p data/multiqc\n",
    "!mkdir -p data/reference\n",
    "!mkdir -p data/rsem\n",
    "\n",
    "## Download Fastq files\n",
    "\n",
    "# Download 24 hr runs from the Google bucket folder\n",
    "# the * wild card will let us download the forward and reverse\n",
    "# fastq files in one command\n",
    "\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161918* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161919* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161920* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161921* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161922* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161923* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8159_SA161924* data/raw_fastq\n",
    "!gsutil cp gs://hon_350/fastq/SE8161_SA161878* data/raw_fastq\n",
    "\n",
    "## Adapter sequences file for trimmomatic\n",
    "!gsutil cp gs://hon_350/reference/TruSeq3-PE.fa data/reference/TruSeq3-PE.fa\n",
    "\n",
    "## (Optional) Download reference files for building transcriptome index\n",
    "#!gsutil cp gs://hon_350/referebce/GRCz11.dna_sm.toplevel.fa.gz data/reference/GRCz11.dna_sm.toplevel.fa.gz\n",
    "#!gsutil cp gs://hon_350/referebce/GRCz11.108.gtf.gz data/reference/GRCz11.108.gtf.gz\n",
    "#!echo 'unzipping...'\n",
    "#!gzip -d data/reference/GRCz11.dna_sm.toplevel.fa.gz\n",
    "#!gzip -d data/reference/GRCz11.107.gtf.gz\n",
    "#!echo 'finished unzipping.'\n",
    "\n",
    "## Download and unzip premade index files\n",
    "!gsutil cp gs://hon_350/reference/rsem_grcz11.108_transcriptome.tar.gz data/reference/rsem_grcz11.108_transcriptome.tar.gz\n",
    "!echo 'unzipping...'\n",
    "!tar -xzvf data/reference/rsem_grcz11.108_transcriptome.tar.gz\n",
    "!rm data/reference/rsem_grcz11.108_transcriptome.tar.gz\n",
    "!echo 'finished unzipping.'"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "c0767b47-81e0-4b68-825f-ee1795b3c6e8",
   "metadata": {},
   "source": [
    "# Trimmomatic\n",
    "\n",
    "Trimmomatic is used to trim fastq files to remove adapters, and low quality score bases in reads.\n",
    "\n",
    "A nice guide on trimmomatic parameters: https://datacarpentry.org/wrangling-genomics/03-trimming/index.html \n",
    "\n",
    "Trimmomatic works on one paired or single end run at a time.\n",
    "\n",
    "However we have dozens of paired-end reads. \n",
    "\n",
    "To speed things up, this example 'pipes in' a list of run ids into trimmomatic to run sequentially."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "979ae9a4-8a2d-46d2-8038-38d16f85521b",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "SE8159_SA161918_S9_L007_R\n",
      "SE8159_SA161919_S10_L007_R\n",
      "SE8159_SA161920_S11_L007_R\n",
      "SE8159_SA161921_S12_L007_R\n",
      "SE8159_SA161922_S13_L007_R\n",
      "SE8159_SA161923_S14_L007_R\n",
      "SE8159_SA161924_S15_L007_R\n",
      "SE8161_SA161878_S1_L007_R\n",
      " \n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161918_S9_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161918_S9_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161918_S9_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161918_S9_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 27207460 Both Surviving: 26801236 (98.51%) Forward Only Surviving: 354042 (1.30%) Reverse Only Surviving: 981 (0.00%) Dropped: 51201 (0.19%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161919_S10_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161919_S10_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161919_S10_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161919_S10_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 25959037 Both Surviving: 25561141 (98.47%) Forward Only Surviving: 359928 (1.39%) Reverse Only Surviving: 655 (0.00%) Dropped: 37313 (0.14%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161920_S11_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161920_S11_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161920_S11_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161920_S11_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 24974529 Both Surviving: 24640681 (98.66%) Forward Only Surviving: 301061 (1.21%) Reverse Only Surviving: 637 (0.00%) Dropped: 32150 (0.13%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161921_S12_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161921_S12_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161921_S12_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161921_S12_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 24346229 Both Surviving: 24006271 (98.60%) Forward Only Surviving: 294997 (1.21%) Reverse Only Surviving: 807 (0.00%) Dropped: 44154 (0.18%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161922_S13_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161922_S13_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161922_S13_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161922_S13_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 27901166 Both Surviving: 27484431 (98.51%) Forward Only Surviving: 362320 (1.30%) Reverse Only Surviving: 1016 (0.00%) Dropped: 53399 (0.19%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161923_S14_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161923_S14_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161923_S14_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161923_S14_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 28237974 Both Surviving: 27832592 (98.56%) Forward Only Surviving: 362222 (1.28%) Reverse Only Surviving: 682 (0.00%) Dropped: 42478 (0.15%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8159_SA161924_S15_L007_R1_001.fastq.gz data/raw_fastq/SE8159_SA161924_S15_L007_R2_001.fastq.gz data/trimmed/SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz data/trimmed/SE8159_SA161924_S15_L007_R1_orphans.fastq.gz data/trimmed/SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz data/trimmed/SE8159_SA161924_S15_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 24821685 Both Surviving: 24469009 (98.58%) Forward Only Surviving: 312605 (1.26%) Reverse Only Surviving: 746 (0.00%) Dropped: 39325 (0.16%)\n",
      "TrimmomaticPE: Completed successfully\n",
      "TrimmomaticPE: Started with arguments:\n",
      " -threads 2 data/raw_fastq/SE8161_SA161878_S1_L007_R1_001.fastq.gz data/raw_fastq/SE8161_SA161878_S1_L007_R2_001.fastq.gz data/trimmed/SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz data/trimmed/SE8161_SA161878_S1_L007_R1_orphans.fastq.gz data/trimmed/SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz data/trimmed/SE8161_SA161878_S1_L007_R2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
      "Using PrefixPair: 'TACACTCTTTCCCTACACGACGCTCTTCCGATCT' and 'GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT'\n",
      "ILLUMINACLIP: Using 1 prefix pairs, 0 forward/reverse sequences, 0 forward only sequences, 0 reverse only sequences\n",
      "Quality encoding detected as phred33\n",
      "Input Read Pairs: 27995388 Both Surviving: 27679860 (98.87%) Forward Only Surviving: 270895 (0.97%) Reverse Only Surviving: 843 (0.00%) Dropped: 43790 (0.16%)\n",
      "TrimmomaticPE: Completed successfully\n"
     ]
    }
   ],
   "source": [
    "# Run trimmomatic\n",
    "# trimmomatic works on one paired-end reads file\n",
    "# at a time. an example might look like this:\n",
    "\n",
    "#!trimmomatic PE -threads 2 data/raw_fastq/trunc_SE6151_SA60191_S8_L004_R1_001.fastq.gz data/raw_fastq/trunc_SE6151_SA60191_S8_L004_R2_001.fastq.gz data/trimmed/SA60191_1_trimmed.fastq.gz data/trimmed/SA60191_1_orphans.fastq.gz data/trimmed/SA60191_2_trimmed.fastq.gz data/trimmed/SA60191_2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
    "\n",
    "# for the sake of this example a list is \n",
    "# created using filenames in the fastq\n",
    "# directory, and those names are piped in\n",
    "# iteratively to the command function\n",
    "\n",
    "# a list of the runs is made\n",
    "!ls data/raw_fastq/*R1* |  sed 's|data/raw_fastq/||g' | sed 's|1_001.fastq.gz||g' > run_ids.txt\n",
    "\n",
    "#what the list looks like\n",
    "!cat run_ids.txt\n",
    "!echo ' '\n",
    "\n",
    "#the list is piped into trimmomatic\n",
    "!cat run_ids.txt |  xargs -I {} trimmomatic PE -threads 16 data/raw_fastq/{}1_001.fastq.gz data/raw_fastq/{}2_001.fastq.gz data/trimmed/{}1_trimmed.fastq.gz data/trimmed/{}1_orphans.fastq.gz data/trimmed/{}2_trimmed.fastq.gz data/trimmed/{}2_orphans.fastq.gz ILLUMINACLIP:data/reference/TruSeq3-PE.fa:2:30:10:2:keepBothReads LEADING:3 TRAILING:3 MINLEN:36\n",
    "\n",
    "#may not be necessary,\n",
    "#but just to save space, delete raw fastq files after\n",
    "!rm -r data/raw_fastq"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "6bbf0b43-8d1c-4bfb-9d83-10312a474b51",
   "metadata": {},
   "source": [
    "# Fastqc\n",
    "\n",
    "Fastqc is a tool to inspect the quality of reads in fastq files."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "c59d25e6-3365-41ea-9b1f-3fc913661d23",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Started analysis of SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
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      "Approx 45% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
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      "Approx 95% complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
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      "Approx 60% complete for SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
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      "Approx 70% complete for SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
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      "Approx 95% complete for SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz\n",
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      "Analysis complete for SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
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      "Approx 20% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 10% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 15% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 10% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 15% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 10% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 15% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 30% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 35% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 40% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
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      "Approx 15% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 20% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 25% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
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      "Approx 40% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 45% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 50% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 55% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 60% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 65% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 70% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 75% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 80% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 85% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 90% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Approx 100% complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz\n",
      "Approx 5% complete for SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz\n",
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      "Approx 20% complete for SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz\n",
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      "Analysis complete for SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz\n",
      "Started analysis of SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz\n",
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      "Approx 95% complete for SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz\n",
      "Analysis complete for SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz\n",
      "Started analysis of SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz\n",
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      "Approx 90% complete for SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz\n",
      "Approx 95% complete for SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz\n",
      "Analysis complete for SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "\n",
       "        <iframe\n",
       "            width=\"800\"\n",
       "            height=\"600\"\n",
       "            src=\"./data/fastqc/trunc_SE6151_SA60184_S1_L004_R1_trimmed_fastqc.html\"\n",
       "            frameborder=\"0\"\n",
       "            allowfullscreen\n",
       "            \n",
       "        ></iframe>\n",
       "        "
      ],
      "text/plain": [
       "<IPython.lib.display.IFrame at 0x7f62eb6a5b10>"
      ]
     },
     "execution_count": 4,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Run fastqc\n",
    "!fastqc -o data/fastqc data/trimmed/*_trimmed.fastq.gz\n",
    "\n",
    "# Example of in-window display of fastqc output file (SA60184).\n",
    "from IPython.display import IFrame\n",
    "IFrame(src='./data/fastqc/SE8159_SA161918_S9_L007_R1_trimmed_fastqc.html', width=800, height=600)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "d8068f13-8cf5-4381-8485-81f061456d67",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "  \u001b[34m/\u001b[0m\u001b[32m/\u001b[0m\u001b[31m/\u001b[0m \u001b]8;id=303068;https://multiqc.info\u001b\\\u001b[1mMultiQC\u001b[0m\u001b]8;;\u001b\\ 🔍 \u001b[2m| v1.13\u001b[0m\n",
      "\n",
      "\u001b[34m|           multiqc\u001b[0m | Search path : /home/jupyter/Example_Whim_Notebook/data/fastqc\n",
      "\u001b[2K\u001b[34m|\u001b[0m         \u001b[34msearching\u001b[0m | \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[35m100%\u001b[0m \u001b[32m32/32\u001b[0m  \u001b[0m0m  \n",
      "\u001b[?25h\u001b[34m|            fastqc\u001b[0m | Found 16 reports\n",
      "\u001b[34m|           multiqc\u001b[0m | Compressing plot data\n",
      "\u001b[34m|           multiqc\u001b[0m | Report      : data/multiqc/multiqc_report.html\n",
      "\u001b[34m|           multiqc\u001b[0m | Data        : data/multiqc/multiqc_data\n",
      "\u001b[34m|           multiqc\u001b[0m | MultiQC complete\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Sample</th>\n",
       "      <th>Filename</th>\n",
       "      <th>File type</th>\n",
       "      <th>Encoding</th>\n",
       "      <th>Total Sequences</th>\n",
       "      <th>Sequences flagged as poor quality</th>\n",
       "      <th>Sequence length</th>\n",
       "      <th>%GC</th>\n",
       "      <th>total_deduplicated_percentage</th>\n",
       "      <th>avg_sequence_length</th>\n",
       "      <th>...</th>\n",
       "      <th>per_base_sequence_quality</th>\n",
       "      <th>per_tile_sequence_quality</th>\n",
       "      <th>per_sequence_quality_scores</th>\n",
       "      <th>per_base_sequence_content</th>\n",
       "      <th>per_sequence_gc_content</th>\n",
       "      <th>per_base_n_content</th>\n",
       "      <th>sequence_length_distribution</th>\n",
       "      <th>sequence_duplication_levels</th>\n",
       "      <th>overrepresented_sequences</th>\n",
       "      <th>adapter_content</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>SE8159_SA161918_S9_L007_R1</td>\n",
       "      <td>SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>26801236.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>50.0</td>\n",
       "      <td>86.570195</td>\n",
       "      <td>114.372489</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>SE8159_SA161918_S9_L007_R2</td>\n",
       "      <td>SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>26801236.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>51.0</td>\n",
       "      <td>82.679703</td>\n",
       "      <td>114.439963</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>SE8159_SA161919_S10_L007_R1</td>\n",
       "      <td>SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>25561141.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>88.268664</td>\n",
       "      <td>116.899008</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>SE8159_SA161919_S10_L007_R2</td>\n",
       "      <td>SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>25561141.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>84.683425</td>\n",
       "      <td>116.964957</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>SE8159_SA161920_S11_L007_R1</td>\n",
       "      <td>SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24640681.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>88.817167</td>\n",
       "      <td>118.067488</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>SE8159_SA161920_S11_L007_R2</td>\n",
       "      <td>SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24640681.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>84.407738</td>\n",
       "      <td>118.124288</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>SE8159_SA161921_S12_L007_R1</td>\n",
       "      <td>SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24006271.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>51.0</td>\n",
       "      <td>87.490356</td>\n",
       "      <td>114.099170</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>SE8159_SA161921_S12_L007_R2</td>\n",
       "      <td>SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24006271.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>51.0</td>\n",
       "      <td>83.541225</td>\n",
       "      <td>114.161399</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>SE8159_SA161922_S13_L007_R1</td>\n",
       "      <td>SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27484431.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>48.0</td>\n",
       "      <td>87.501492</td>\n",
       "      <td>112.275292</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>SE8159_SA161922_S13_L007_R2</td>\n",
       "      <td>SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27484431.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>85.277345</td>\n",
       "      <td>112.344603</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>SE8159_SA161923_S14_L007_R1</td>\n",
       "      <td>SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27832592.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>48.0</td>\n",
       "      <td>88.635164</td>\n",
       "      <td>115.616395</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>SE8159_SA161923_S14_L007_R2</td>\n",
       "      <td>SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27832592.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>48.0</td>\n",
       "      <td>85.223734</td>\n",
       "      <td>115.662697</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>SE8159_SA161924_S15_L007_R1</td>\n",
       "      <td>SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24469009.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>87.368294</td>\n",
       "      <td>115.939553</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>SE8159_SA161924_S15_L007_R2</td>\n",
       "      <td>SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>24469009.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>84.787202</td>\n",
       "      <td>116.006480</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>SE8161_SA161878_S1_L007_R1</td>\n",
       "      <td>SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27679860.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>85.792216</td>\n",
       "      <td>115.073409</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>pass</td>\n",
       "      <td>fail</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>SE8161_SA161878_S1_L007_R2</td>\n",
       "      <td>SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz</td>\n",
       "      <td>Conventional base calls</td>\n",
       "      <td>Sanger / Illumina 1.9</td>\n",
       "      <td>27679860.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>36-151</td>\n",
       "      <td>49.0</td>\n",
       "      <td>83.916805</td>\n",
       "      <td>115.086664</td>\n",
       "      <td>...</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>fail</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "      <td>warn</td>\n",
       "      <td>pass</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>16 rows × 21 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                         Sample                                      Filename  \\\n",
       "0    SE8159_SA161918_S9_L007_R1   SE8159_SA161918_S9_L007_R1_trimmed.fastq.gz   \n",
       "1    SE8159_SA161918_S9_L007_R2   SE8159_SA161918_S9_L007_R2_trimmed.fastq.gz   \n",
       "2   SE8159_SA161919_S10_L007_R1  SE8159_SA161919_S10_L007_R1_trimmed.fastq.gz   \n",
       "3   SE8159_SA161919_S10_L007_R2  SE8159_SA161919_S10_L007_R2_trimmed.fastq.gz   \n",
       "4   SE8159_SA161920_S11_L007_R1  SE8159_SA161920_S11_L007_R1_trimmed.fastq.gz   \n",
       "5   SE8159_SA161920_S11_L007_R2  SE8159_SA161920_S11_L007_R2_trimmed.fastq.gz   \n",
       "6   SE8159_SA161921_S12_L007_R1  SE8159_SA161921_S12_L007_R1_trimmed.fastq.gz   \n",
       "7   SE8159_SA161921_S12_L007_R2  SE8159_SA161921_S12_L007_R2_trimmed.fastq.gz   \n",
       "8   SE8159_SA161922_S13_L007_R1  SE8159_SA161922_S13_L007_R1_trimmed.fastq.gz   \n",
       "9   SE8159_SA161922_S13_L007_R2  SE8159_SA161922_S13_L007_R2_trimmed.fastq.gz   \n",
       "10  SE8159_SA161923_S14_L007_R1  SE8159_SA161923_S14_L007_R1_trimmed.fastq.gz   \n",
       "11  SE8159_SA161923_S14_L007_R2  SE8159_SA161923_S14_L007_R2_trimmed.fastq.gz   \n",
       "12  SE8159_SA161924_S15_L007_R1  SE8159_SA161924_S15_L007_R1_trimmed.fastq.gz   \n",
       "13  SE8159_SA161924_S15_L007_R2  SE8159_SA161924_S15_L007_R2_trimmed.fastq.gz   \n",
       "14   SE8161_SA161878_S1_L007_R1   SE8161_SA161878_S1_L007_R1_trimmed.fastq.gz   \n",
       "15   SE8161_SA161878_S1_L007_R2   SE8161_SA161878_S1_L007_R2_trimmed.fastq.gz   \n",
       "\n",
       "                  File type               Encoding  Total Sequences  \\\n",
       "0   Conventional base calls  Sanger / Illumina 1.9       26801236.0   \n",
       "1   Conventional base calls  Sanger / Illumina 1.9       26801236.0   \n",
       "2   Conventional base calls  Sanger / Illumina 1.9       25561141.0   \n",
       "3   Conventional base calls  Sanger / Illumina 1.9       25561141.0   \n",
       "4   Conventional base calls  Sanger / Illumina 1.9       24640681.0   \n",
       "5   Conventional base calls  Sanger / Illumina 1.9       24640681.0   \n",
       "6   Conventional base calls  Sanger / Illumina 1.9       24006271.0   \n",
       "7   Conventional base calls  Sanger / Illumina 1.9       24006271.0   \n",
       "8   Conventional base calls  Sanger / Illumina 1.9       27484431.0   \n",
       "9   Conventional base calls  Sanger / Illumina 1.9       27484431.0   \n",
       "10  Conventional base calls  Sanger / Illumina 1.9       27832592.0   \n",
       "11  Conventional base calls  Sanger / Illumina 1.9       27832592.0   \n",
       "12  Conventional base calls  Sanger / Illumina 1.9       24469009.0   \n",
       "13  Conventional base calls  Sanger / Illumina 1.9       24469009.0   \n",
       "14  Conventional base calls  Sanger / Illumina 1.9       27679860.0   \n",
       "15  Conventional base calls  Sanger / Illumina 1.9       27679860.0   \n",
       "\n",
       "    Sequences flagged as poor quality Sequence length   %GC  \\\n",
       "0                                 0.0          36-151  50.0   \n",
       "1                                 0.0          36-151  51.0   \n",
       "2                                 0.0          36-151  49.0   \n",
       "3                                 0.0          36-151  49.0   \n",
       "4                                 0.0          36-151  49.0   \n",
       "5                                 0.0          36-151  49.0   \n",
       "6                                 0.0          36-151  51.0   \n",
       "7                                 0.0          36-151  51.0   \n",
       "8                                 0.0          36-151  48.0   \n",
       "9                                 0.0          36-151  49.0   \n",
       "10                                0.0          36-151  48.0   \n",
       "11                                0.0          36-151  48.0   \n",
       "12                                0.0          36-151  49.0   \n",
       "13                                0.0          36-151  49.0   \n",
       "14                                0.0          36-151  49.0   \n",
       "15                                0.0          36-151  49.0   \n",
       "\n",
       "    total_deduplicated_percentage  avg_sequence_length  ...  \\\n",
       "0                       86.570195           114.372489  ...   \n",
       "1                       82.679703           114.439963  ...   \n",
       "2                       88.268664           116.899008  ...   \n",
       "3                       84.683425           116.964957  ...   \n",
       "4                       88.817167           118.067488  ...   \n",
       "5                       84.407738           118.124288  ...   \n",
       "6                       87.490356           114.099170  ...   \n",
       "7                       83.541225           114.161399  ...   \n",
       "8                       87.501492           112.275292  ...   \n",
       "9                       85.277345           112.344603  ...   \n",
       "10                      88.635164           115.616395  ...   \n",
       "11                      85.223734           115.662697  ...   \n",
       "12                      87.368294           115.939553  ...   \n",
       "13                      84.787202           116.006480  ...   \n",
       "14                      85.792216           115.073409  ...   \n",
       "15                      83.916805           115.086664  ...   \n",
       "\n",
       "   per_base_sequence_quality per_tile_sequence_quality  \\\n",
       "0                       pass                      pass   \n",
       "1                       pass                      warn   \n",
       "2                       pass                      pass   \n",
       "3                       pass                      warn   \n",
       "4                       pass                      pass   \n",
       "5                       pass                      warn   \n",
       "6                       pass                      pass   \n",
       "7                       pass                      warn   \n",
       "8                       pass                      pass   \n",
       "9                       pass                      warn   \n",
       "10                      pass                      pass   \n",
       "11                      pass                      warn   \n",
       "12                      pass                      pass   \n",
       "13                      pass                      warn   \n",
       "14                      pass                      pass   \n",
       "15                      pass                      warn   \n",
       "\n",
       "   per_sequence_quality_scores per_base_sequence_content  \\\n",
       "0                         pass                      fail   \n",
       "1                         pass                      warn   \n",
       "2                         pass                      fail   \n",
       "3                         pass                      warn   \n",
       "4                         pass                      fail   \n",
       "5                         pass                      warn   \n",
       "6                         pass                      fail   \n",
       "7                         pass                      warn   \n",
       "8                         pass                      fail   \n",
       "9                         pass                      warn   \n",
       "10                        pass                      fail   \n",
       "11                        pass                      warn   \n",
       "12                        pass                      fail   \n",
       "13                        pass                      warn   \n",
       "14                        pass                      fail   \n",
       "15                        pass                      warn   \n",
       "\n",
       "   per_sequence_gc_content per_base_n_content sequence_length_distribution  \\\n",
       "0                     fail               pass                         warn   \n",
       "1                     fail               pass                         warn   \n",
       "2                     fail               pass                         warn   \n",
       "3                     fail               pass                         warn   \n",
       "4                     fail               pass                         warn   \n",
       "5                     fail               pass                         warn   \n",
       "6                     fail               pass                         warn   \n",
       "7                     fail               pass                         warn   \n",
       "8                     fail               pass                         warn   \n",
       "9                     fail               pass                         warn   \n",
       "10                    fail               pass                         warn   \n",
       "11                    fail               pass                         warn   \n",
       "12                    fail               pass                         warn   \n",
       "13                    fail               pass                         warn   \n",
       "14                    fail               pass                         warn   \n",
       "15                    fail               pass                         warn   \n",
       "\n",
       "   sequence_duplication_levels overrepresented_sequences adapter_content  \n",
       "0                         pass                      warn            pass  \n",
       "1                         pass                      warn            pass  \n",
       "2                         pass                      warn            pass  \n",
       "3                         pass                      warn            pass  \n",
       "4                         pass                      warn            pass  \n",
       "5                         pass                      warn            pass  \n",
       "6                         pass                      warn            pass  \n",
       "7                         pass                      warn            pass  \n",
       "8                         pass                      warn            pass  \n",
       "9                         pass                      warn            pass  \n",
       "10                        pass                      warn            pass  \n",
       "11                        pass                      warn            pass  \n",
       "12                        pass                      warn            pass  \n",
       "13                        pass                      warn            pass  \n",
       "14                        pass                      warn            pass  \n",
       "15                        pass                      warn            pass  \n",
       "\n",
       "[16 rows x 21 columns]"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "!multiqc -f data/fastqc -o data/multiqc\n",
    "\n",
    "import pandas as pd\n",
    "dframe = pd.read_csv(\"data/multiqc/multiqc_data/multiqc_fastqc.txt\", sep='\\t')\n",
    "display(dframe)"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "54262a2d-ec30-4ad9-8f49-63db2c41e54d",
   "metadata": {},
   "source": [
    "# Rsem\n",
    "\n",
    "In order to map reads to genes, and quantify read counts, an index must be created. In this case, we are using rsem for index creation and quantifying read counts.\n",
    "\n",
    "The output and error log for this software is too large to display in the cell below, so is stored in a text log file 'rsem/rsem_log.txt' instead. \n",
    "\n",
    "For the example truncated set this can finish within a few minutes, but with the actual data set this will take around eight hours to fully run."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "id": "0953c9f6-083d-4b71-add6-fbdb27c6d91f",
   "metadata": {
    "scrolled": true,
    "tags": []
   },
   "outputs": [],
   "source": [
    "## Build transcriptome reference\n",
    "\n",
    "#!rsem-prepare-reference --gtf data/reference/GRCz11.108.gtf --bowtie -p 8 data/reference/GRCz11.dna_sm.toplevel.fa data/reference/zebrafish_rsem/GRCz11_108 "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "acd76c1a-2b41-4bc6-b6d5-63cda85785ab",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "running calculate counts...\n"
     ]
    }
   ],
   "source": [
    "# to make writing commands easier,\n",
    "# again we will make a list and 'pipe' the list\n",
    "# into rsem.\n",
    "# first make a list\n",
    "!ls data/trimmed/*R1*trimmed* |  sed 's|data/trimmed/||g' | sed 's|.fastq.gz||g' > trimmed_ids.txt\n",
    "# then run rsem\n",
    "!echo 'running calculate counts...'\n",
    "!cat trimmed_ids.txt |  xargs -I {} rsem-calculate-expression -p 16 --forward-prob 0 data/trimmed/{}.fastq.gz data/reference/zebrafish_rsem/GRCz11_108 data/rsem/{} >data/rsem/rsem_log.txt 2>&1\n",
    "!echo 'finished'"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "d0ad4d94-ce11-4116-ac76-2a17309516d3",
   "metadata": {},
   "source": [
    "# Read count file outputs\n",
    "\n",
    "Rsem outputs readcount files (XXXXX.genes.results) which are tables that contain various information, including readcounts in transcripts per kilobase million (TPM) and fragments per kilobase of exon per million mapped fragments (FPKM) format."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "5e5b7af5-9a20-4bf7-a42b-a75c0a9918f8",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "gene_id  transcript_id(s)  length  effective_length  expected_count  TPM  FPKM\n",
      "ENSDARG00000087732  ENSDART00000122203  298.00   184.61   426598.37  131833.23  185369.87\n",
      "ENSDARG00000114494  ENSDART00000187218  165.00   51.61    106601.97  117835.88  165688.29\n",
      "ENSDARG00000110859  ENSDART00000193467  165.00   51.61    33489.10   37018.24   52051.11\n",
      "ENSDARG00000109433  ENSDART00000180315  165.00   51.61    33489.10   37018.24   52051.11\n",
      "ENSDARG00000083063  ENSDART00000118247  165.00   51.61    33489.10   37018.24   52051.11\n",
      "ENSDARG00000089382  ENSDART00000126982  1212.00  1098.61  711006.00  36922.86   51917.01\n",
      "ENSDARG00000114910  ENSDART00000183213  312.00   198.61   85085.32   24440.77   34366.01\n",
      "ENSDARG00000081580  ENSDART00000116507  72.00    2.68     1090.00    23190.21   32607.61\n",
      "ENSDARG00000081270  ENSDART00000117461  322.00   208.61   82572.80   22582.05   31752.48\n",
      "ENSDARG00000082753  ENSDART00000115891  952.00   838.61   328630.40  22356.98   31436.00\n"
     ]
    }
   ],
   "source": [
    "# Example of read count table output\n",
    "# (sorted by top 10 expressed genes)\n",
    "!head -1 $(ls data/rsem/*.genes.results | head -n1) | column -t\n",
    "!sort -nrk 6 $(ls data/rsem/*.genes.results | head -n1) |  column -t | head -10  | column -t"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "c035c038-5fdd-4b3b-ac3c-023c3db4601c",
   "metadata": {},
   "source": [
    "# Upload files to bucket\n",
    "In order for the files to be shared and downloaded, we need to upload them to the google bucket."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "420d72a2-4e13-434d-8f48-5e3f64fd618a",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Copying file://data/rsem/SE8159_SA161918_S9_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8159_SA161919_S10_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8159_SA161920_S11_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8159_SA161921_S12_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "\\ [4 files][ 10.6 MiB/ 10.6 MiB]                                                \n",
      "==> NOTE: You are performing a sequence of gsutil operations that may\n",
      "run significantly faster if you instead use gsutil -m cp ... Please\n",
      "see the -m section under \"gsutil help options\" for further information\n",
      "about when gsutil -m can be advantageous.\n",
      "\n",
      "Copying file://data/rsem/SE8159_SA161922_S13_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8159_SA161923_S14_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8159_SA161924_S15_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "Copying file://data/rsem/SE8161_SA161878_S1_L007_R1_trimmed.genes.results [Content-Type=application/octet-stream]...\n",
      "/ [8 files][ 21.3 MiB/ 21.3 MiB]                                                \n",
      "Operation completed over 8 objects/21.3 MiB.                                     \n"
     ]
    }
   ],
   "source": [
    "## Upload to bucket\n",
    "!gsutil cp data/rsem/*.genes.results gs://hon_350/24hours_results/"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "18dbf917-2e4b-4b4c-8438-8d4d2c326f09",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "environment": {
   "kernel": "python3",
   "name": "r-cpu.4-2.m102",
   "type": "gcloud",
   "uri": "gcr.io/deeplearning-platform-release/r-cpu.4-2:m102"
  },
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.7.12"
  }
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