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Pipeline error #18

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dpo opened this issue Aug 3, 2024 · 7 comments
Closed

Pipeline error #18

dpo opened this issue Aug 3, 2024 · 7 comments

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@dpo
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dpo commented Aug 3, 2024 

❯ wget https://featured.plutojl.org/basic/Pluto%20for%20scientists.jl && mv "Pluto for scientists.jl" notebook.jl

❯ cat pluto_to_pdf.jl
import PlutoPDF
PlutoPDF.pluto_to_pdf("notebook.jl")

❯ julia pluto_to_pdf.jl
[ Info: Running notebook...
┌ Warning: The active manifest file at `/private/var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_UQYNJ0/Manifest.toml` has an old format that is being maintained.
│ To update to the new format, which is supported by Julia versions ≥ 1.6.2, run `import Pkg; Pkg.upgrade_manifest()` which will upgrade the format without re-resolving.
│ To then record the julia version re-resolve with `Pkg.resolve()` and if there are resolve conflicts consider `Pkg.update()`.
└ @ Pkg.Types ~/.julia/juliaup/julia-1.10.4+0.x64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/manifest.jl:318
    Updating registry at `~/.julia/registries/General.toml`
┌ Warning: The active manifest file is an older format with no julia version entry. Dependencies may have been resolved with a different julia version.
└ @ /private/var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_UQYNJ0/Manifest.toml:0
[ Info: Generating pdf...
[ Info: PlutoPDF: Running npm install in scratch space...
10.5.0

up to date, audited 123 packages in 1s

11 packages are looking for funding
  run `npm fund` for details

5 high severity vulnerabilities

To address all issues, run:
  npm audit fix

Run `npm audit` for details.

  Degraded performance warning:
  Launching Chrome on Mac Silicon (arm64) from an x64 Node installation results in
  Rosetta translating the Chrome binary, even if Chrome is already arm64. This would
  result in huge performance issues. To resolve this, you must run Puppeteer with
  a version of Node built for arm64.
Initiated headless browser
file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/util/Deferred.js:56
            this.#timeoutError = new TimeoutError(opts.message);
                                 ^

TimeoutError: Navigation timeout of 30000 ms exceeded
    at new Deferred (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/util/Deferred.js:56:34)
    at Deferred.create (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/util/Deferred.js:18:16)
    at new LifecycleWatcher (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/cdp/LifecycleWatcher.js:62:46)
    at CdpFrame.goto (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/cdp/Frame.js:132:29)
    at CdpFrame.<anonymous> (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/util/decorators.js:94:27)
    at CdpPage.goto (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/api/Page.js:563:43)
    at pdf (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/export.js:18:16)
    at process.processTicksAndRejections (node:internal/process/task_queues:95:5)
    at async file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/bin.js:16:1

Node.js v20.12.2
ERROR: LoadError: failed process: Process(setenv(`/Users/dpo/.julia/artifacts/7cb314205de4825730e5c6c3e356bf5d298dcb77/bin/node /Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/bin.js /var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_jWvSdA1WBC.html /private/tmp/book/notebook.pdf '{"format":"A4","margin":{"top":"30mm","right":"15mm","bottom":"30mm","left":"10mm"},"printBackground":true,"displayHeaderFooter":false}' '' '{"outputOnly":false,"scale":2}'`,["XPC_FLAGS=0x0", "P9K_SSH=0", "PATH=/Users/dpo/.julia/artifacts/7cb314205de4825730e5c6c3e356bf5d298dcb77/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/opt/X11/bin:/usr/local/MacGPG2/bin:/Library/TeX/texbin:/Applications/quarto/bin:/Users/dpo/local/solvers/knitro/knitro-13.0.1-MacOS-M1/knitroampl:/Users/dpo/perl5/bin:/opt/homebrew/opt/openjdk/bin:/Users/dpo/.local/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/opt/homebrew/opt/fzf/bin", "EDITOR=lvim", "LATEX_STYLES=/Users/dpo/dev/latex/latex-styles", "XPC_SERVICE_NAME=0", "HOMEBREW_PREFIX=/opt/homebrew", "_P9K_TTY=/dev/ttys015", "DYLD_FALLBACK_LIBRARY_PATH=/Users/dpo/.julia/juliaup/julia-1.10.4+0.x64.apple.darwin14/bin/../lib/julia:/Users/dpo/.julia/juliaup/julia-1.10.4+0.x64.apple.darwin14/bin/../lib:/Users/dpo/lib:/usr/local/lib:/lib:/usr/lib", "PERL_MM_OPT=INSTALL_BASE=/Users/dpo/perl5"  …  "BIBINPUTS=.:/Users/dpo/dev/latex/latex-styles/share::", "P9K_TTY=old", "WEZTERM_CONFIG_DIR=/Users/dpo/.config/wezterm", "PERL_MB_OPT=--install_base \"/Users/dpo/perl5\"", "WEZTERM_CONFIG_FILE=/Users/dpo/.config/wezterm/wezterm.lua", "HOME=/Users/dpo", "TERM=xterm-256color", "WEZTERM_PANE=16", "OPENBLAS_MAIN_FREE=1", "COLORTERM=truecolor"]), ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:565 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:480
 [3] run
   @ ./process.jl:477 [inlined]
 [4] html_to_pdf(html_path::String, output_path::String, screenshot_dir_path::Nothing; options::@NamedTuple{format::String, margin::@NamedTuple{top::String, right::String, bottom::String, left::String}, printBackground::Bool, displayHeaderFooter::Bool}, screenshot_options::@NamedTuple{outputOnly::Bool, scale::Int64}, open::Bool, console_output::Bool)
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:75
 [5] html_to_pdf
   @ ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:49 [inlined]
 [6] pluto_to_pdf(notebook_path::String, output_path::Nothing, screenshot_dir_path::Nothing; kwargs::@Kwargs{})
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:129
 [7] pluto_to_pdf
   @ ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:108 [inlined]
 [8] pluto_to_pdf(notebook_path::String)
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:108
 [9] top-level scope
   @ /private/tmp/book/pluto_to_pdf.jl:2
in expression starting at /private/tmp/book/pluto_to_pdf.jl:2
@fonsp
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fonsp commented Aug 6, 2024

Weird! What Julia version do you have? Do you have the armr64 or x86 version of Julia?

@dpo
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dpo commented Aug 6, 2024

I'm using Julia 1.10.4. I tried both x86 and aarch64. The error above is with the x86 version. On aarch64, I get

❯ julia pluto_to_pdf.jl                                                                                                                                                                                                            07:44:12
[ Info: Running notebook...
┌ Warning: The active manifest file at `/private/var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_4GwZ0q/Manifest.toml` has an old format that is being maintained.
│ To update to the new format, which is supported by Julia versions ≥ 1.6.2, run `import Pkg; Pkg.upgrade_manifest()` which will upgrade the format without re-resolving.
│ To then record the julia version re-resolve with `Pkg.resolve()` and if there are resolve conflicts consider `Pkg.update()`.
└ @ Pkg.Types ~/.julia/juliaup/julia-1.10.4+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/manifest.jl:318
    Updating registry at `~/.julia/registries/General.toml`
┌ Warning: The active manifest file is an older format with no julia version entry. Dependencies may have been resolved with a different julia version.
└ @ /private/var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_4GwZ0q/Manifest.toml:0
[ Info: Generating pdf...
[ Info: PlutoPDF: Running npm install in scratch space...
10.5.0

up to date, audited 123 packages in 705ms

11 packages are looking for funding
  run `npm fund` for details

5 high severity vulnerabilities

To address all issues, run:
  npm audit fix

Run `npm audit` for details.
file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/node/ProductLauncher.js:259
                    throw new Error(`Could not find Chrome (ver. ${this.puppeteer.browserRevision}). This can occur if either\n` +
                          ^

Error: Could not find Chrome (ver. 121.0.6167.85). This can occur if either
 1. you did not perform an installation before running the script (e.g. `npx puppeteer browsers install chrome`) or
 2. your cache path is incorrectly configured (which is: /Users/dpo/.cache/puppeteer).
For (2), check out our guide on configuring puppeteer at https://pptr.dev/guides/configuration.
    at ChromeLauncher.resolveExecutablePath (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/node/ProductLauncher.js:259:27)
    at ChromeLauncher.executablePath (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/node/ChromeLauncher.js:190:25)
    at ChromeLauncher.computeLaunchArguments (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/node/ChromeLauncher.js:83:37)
    at async ChromeLauncher.launch (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/node_modules/puppeteer-core/lib/esm/puppeteer/node/ProductLauncher.js:44:28)
    at async pdf (file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/export.js:14:21)
    at async file:///Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/bin.js:16:1

Node.js v20.12.2
ERROR: LoadError: failed process: Process(setenv(`/Users/dpo/.julia/artifacts/34a516c9d97d925f9ae668de15ecaa6eeeb8df32/bin/node /Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir3/bin.js /var/folders/0w/gr6q1p614svb9p0gfmlcfjjr0000gn/T/jl_VM1ktKPO9M.html /private/tmp/notebook.pdf '{"format":"A4","margin":{"top":"30mm","right":"15mm","bottom":"30mm","left":"10mm"},"printBackground":true,"displayHeaderFooter":false}' '' '{"outputOnly":false,"scale":2}'`,["XPC_FLAGS=0x0", "P9K_SSH=0", "PATH=/Users/dpo/.julia/artifacts/34a516c9d97d925f9ae668de15ecaa6eeeb8df32/bin:/Users/dpo/.gem/ruby/3.1.3/bin:/Users/dpo/.rubies/ruby-3.1.3/lib/ruby/gems/3.1.0/bin:/Users/dpo/.rubies/ruby-3.1.3/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/opt/X11/bin:/usr/local/MacGPG2/bin:/Library/TeX/texbin:/Applications/quarto/bin:/Users/dpo/local/solvers/knitro/knitro-13.0.1-MacOS-M1/knitroampl:/Users/dpo/perl5/bin:/opt/homebrew/opt/openjdk/bin:/Users/dpo/.local/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/opt/homebrew/opt/fzf/bin", "EDITOR=lvim", "LATEX_STYLES=/Users/dpo/dev/latex/latex-styles", "XPC_SERVICE_NAME=0", "HOMEBREW_PREFIX=/opt/homebrew", "_P9K_TTY=/dev/ttys012", "DYLD_FALLBACK_LIBRARY_PATH=/Users/dpo/.julia/juliaup/julia-1.10.4+0.aarch64.apple.darwin14/bin/../lib/julia:/Users/dpo/.julia/juliaup/julia-1.10.4+0.aarch64.apple.darwin14/bin/../lib:/Users/dpo/lib:/usr/local/lib:/lib:/usr/lib", "PERL_MM_OPT=INSTALL_BASE=/Users/dpo/perl5"  …  "P9K_TTY=old", "GEM_HOME=/Users/dpo/.gem/ruby/3.1.3", "WEZTERM_CONFIG_DIR=/Users/dpo/.config/wezterm", "PERL_MB_OPT=--install_base \"/Users/dpo/perl5\"", "WEZTERM_CONFIG_FILE=/Users/dpo/.config/wezterm/wezterm.lua", "HOME=/Users/dpo", "TERM=xterm-256color", "WEZTERM_PANE=14", "OPENBLAS_MAIN_FREE=1", "COLORTERM=truecolor"]), ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:565 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:480
 [3] run
   @ ./process.jl:477 [inlined]
 [4] html_to_pdf(html_path::String, output_path::String, screenshot_dir_path::Nothing; options::@NamedTuple{format::String, margin::@NamedTuple{top::String, right::String, bottom::String, left::String}, printBackground::Bool, displayHeaderFooter::Bool}, screenshot_options::@NamedTuple{outputOnly::Bool, scale::Int64}, open::Bool, console_output::Bool)
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:75
 [5] html_to_pdf
   @ ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:49 [inlined]
 [6] pluto_to_pdf(notebook_path::String, output_path::Nothing, screenshot_dir_path::Nothing; kwargs::@Kwargs{})
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:129
 [7] pluto_to_pdf
   @ ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:108 [inlined]
 [8] pluto_to_pdf(notebook_path::String)
   @ PlutoPDF ~/.julia/packages/PlutoPDF/S8wOa/src/PlutoPDF.jl:108
 [9] top-level scope
   @ /private/tmp/pluto_to_pdf.jl:2
in expression starting at /private/tmp/pluto_to_pdf.jl:2

Are we supposed to install other tools manually in order for PlutoPDF to work?

@fonsp
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fonsp commented Aug 10, 2024 •
edited
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Could you delete /Users/dpo/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6 (or just all scratch spaces with /Users/dpo/.julia/scratchspaces/ if you don't mind) and try again? Julia 1.10.4 with x86 should work.

@fonsp
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fonsp commented Aug 10, 2024

@dpo Can you check if #19 fixes your issue?

@fonsp
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fonsp commented Jan 30, 2025

Feel free to comment if this is still an issue!

@fonsp fonsp closed this as not planned Won't fix, can't repro, duplicate, stale Jan 30, 2025
@Technici4n
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Technici4n commented Jan 31, 2025 •
edited
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Hi, I am running into this issue as well, but only when calling html_to_pdf. When I call pluto_to_pdf everything works fine. In my specific case, the Pluto notebooks are already rendered to html via PlutoSliderServer, and I figured it might make sense to render the html files directly to pdf,.

EDIT: This is with PlutoPDF v1.2.1.

@Technici4n
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Here is the stacktrace if it is helpful:

[ Info: Generating pdf...
┌ Info: PlutoPDF: Running npm install in scratch space...
│   npm_version =
│    10.5.0
└

added 8 packages, removed 13 packages, and changed 28 packages in 1m
[ Info: PlutoPDF: Finished npm install.
Initiated headless browser
Loaded notebook file
file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/common/WaitTask.js:45
            this.#timeoutError = new TimeoutError(`Waiting failed: ${options.timeout}ms exceeded`);
                                 ^

TimeoutError: Waiting failed: 30000ms exceeded
    at new WaitTask (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/common/WaitTask.js:45:34)
    at IsolatedWorld.waitForFunction (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/api/Realm.js:22:26)
    at CdpFrame.waitForFunction (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/api/Frame.js:568:43)
    at CdpFrame.<anonymous> (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/util/decorators.js:101:27)
    at CdpPage.waitForFunction (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/node_modules/puppeteer-core/lib/esm/puppeteer/api/Page.js:1430:37)
    at waitForPlutoBusy (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/export.js:81:16)
    at async pdf (file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/export.js:31:5)
    at async file:///home/bruno/.julia/scratchspaces/6eb38059-8c05-41f7-8871-5e7e2697ace6/build_dir4/bin.js:16:1

Node.js v20.12.2
ERROR: LoadError: failed process: Process(setenv(<redacted>), ProcessExited(1)) [1]

Stacktrace:
 [1] pipeline_error
   @ ./process.jl:598 [inlined]
 [2] run(::Cmd; wait::Bool)
   @ Base ./process.jl:513
 [3] run
   @ ./process.jl:510 [inlined]
 [4] html_to_pdf(html_path::String, output_path::Nothing, screenshot_dir_path::Nothing; options::@NamedTuple{…}, screenshot_options::@NamedTuple{…}, open::Bool, console_output::Bool)
   @ PlutoPDF ~/.julia/packages/PlutoPDF/1jyaE/src/PlutoPDF.jl:75
 [5] html_to_pdf (repeats 2 times)
   @ ~/.julia/packages/PlutoPDF/1jyaE/src/PlutoPDF.jl:49 [inlined]
 [6] top-level scope
   @ ~/numerical-analysis/to_pdf_from_html.jl:7
 [7] include(fname::String)
   @ Main ./sysimg.jl:38
 [8] top-level scope
   @ REPL[2]:1
in expression starting at /home/bruno/numerical-analysis/to_pdf_from_html.jl:3
Some type information was truncated. Use `show(err)` to see complete types.

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@dpo @fonsp @Technici4n