CITATION.bib

% reference for the package
@misc{QuartetNetworkGoodnessFit.jl,
  author  = {Cécile Ané <cecileane@users.noreply.github.com> and contributors},
  title   = {QuartetNetworkGoodnessFit.jl: Julia package for phylogenetic networks analyses using four-taxon subsets},
  url     = {https://github.com/JuliaPhylo/QuartetNetworkGoodnessFit.jl},
  version = {v0.5.1},
  year    = {2023},
}
% reference for the goodness-of-fit test
@article{2021CaiAne,
    author  = {Ruoyi Cai & C{\'e}cile An{\'e}},
    title = {Assessing the fit of the multi-species network coalescent to multi-locus data},
    year = {2021},
    journal = {Bioinformatics},
    volume = {37},
    number = {5},
    pages = {634-641},
    doi = {10.1093/bioinformatics/btaa863},
}
% reference for the algorithm to calculate expected quartet concordance factors
@article{2024AFABR-anomalous,
    author = {C{\'e}cile An{\'e} and John Fogg and Elizabeth S. Allman and
      Hector Ba{\~n}os and John A. Rhodes},
    title = {Anomalous networks under the multispecies coalescent: theory and prevalence},
    year = {2024},
    journal = {Journal of Mathematical Biology},
    volume = {88},
    pages = {29},
    doi = {10.1007/s00285-024-02050-7},
}
% reference for the simulation package and the correlated inheritance model
@article{2023fogg_phylocoalsimulations,
  author = {Fogg, John and Allman, Elizabeth S and An{\'e}, C{\'e}cile},
  title = {{PhyloCoalSimulations}: A simulator for network multispecies coalescent
        models, including a new extension for the inheritance of gene flow},
  journal = {Systematic Biology},
  year = {2023},
  volume = {72},
  number = {5},
  pages = {1171-1179},
  doi = {10.1093/sysbio/syad030},
}