- Install PosePipeline into your path
git clone https://github.com/peabody124/PosePipeline.git
cd PosePipeline
pip install -e .
- Launch DataJoint database. One can also set up a local MySQL database, following the instruction at DataJoint.
cd datajoint_docker
docker-compose up -d
- When running code, make sure to configure repository for where video stores will be kept. This can also be saved to
the DataJoint configuration.
dj.config['stores'] = {
'localattach': {
'protocol': 'file',
'location': '/mnt/data0/clinical_data/datajoint_external'
}
}
- To use
OpenMMLab packages, the following additional step is required. Note: this assume uv is being used as the package manager.
uv run bash scripts/mmlab_install.sh