diff --git a/docs/development/hacking_itk_wasm.md b/docs/development/hacking_itk_wasm.md index 7bf95d3ce..7ed565858 100644 --- a/docs/development/hacking_itk_wasm.md +++ b/docs/development/hacking_itk_wasm.md @@ -1,244 +1,251 @@ -# Hacking ITK-Wasm - -## TLDR - -Install [Podman] and [Pixi], and - -```sh -./src/docker/pull.sh -pixi run build -pixi run test -``` - -and contribute the patch with standard GitHub best practices. - -## Introduction - -**Welcome to the ITK community! ☀️** - -We are glad you are here and appreciate your contribution. Please keep in mind our [community participation guidelines](https://github.com/InsightSoftwareConsortium/ITK/blob/master/CODE_OF_CONDUCT.md). - -We follow [standard GitHub contribution best practices]: pull requests made from forks are tested with continuous integration tests, and updates are made via code review before integration. - -We use the [conventional commit] standard for our commit message format in the *itk-wasm* repository. - -The C++ core and Docker build environment can be developed independently from the CLI, language-specific libraries, and example packages. The latter are developed as a [pnpm workspace]. Individual packages in the workspace can be developed independently after `pnpm install` is executed at the root. - -The following sections describe how to contribute to [**ITK-Wasm's constituent parts**](../introduction/parts.md). - -## C++ core - -ITK-Wasm's [C++ core](../introduction/parts.md#cxx-core) can be developed with native toolchains. The steps are: - -0. Install a [C++ compiler toolchain] and [CMake] -1. Build [ITK] -2. Build the `WebAssemblyInterface` module from this module against ITK -3. Run the tests - -We recommend using [pixi](https://pixi.sh) with a bash shell (including on Windows). -The steps to build and test the C++ core with a native toolchain are: - -1. Install pixi: `curl -fsSL https://pixi.sh/install.sh | bash` -2. Clone [the ITK-Wasm GitHub repository](https://github.com/InsightSoftwareConsortium/ITK-Wasm) -3. Run `pixi run test-itk-wasm` - -For additional guidance on C++ development, see the [ITK Software Guide]. - -If changes are needed in the ITK repository, start from the [current repository and branch] where we store changes that are being pushed upstream. - -### Testing data - -To prevent Git repository bloat, we add testing data through [CMake content links](https://docs.itk.org/en/latest/contributing/upload_binary_data.html) of [Content Identifiers (CIDs)](https://proto.school/anatomy-of-a-cid). To add new test data, - -1. Upload the data and download its content link *.cid* file with the [CMake w3 ExternalData Upload Tool](https://content-link-upload.itk.org/) -2. Move the *.cid* file to *itk-wasm/test/Input/* -3. Reference the content link with a `DATA{}` call in *itk-wasm/test/CMakeLists.txt*. - -## Build environment Docker images - -Builds of the [wasm build environment Docker images](../introduction/parts.md#docker) or WebAssembly modules require [Podman]. -*Note*: on Linux, ensure the [`vfs` podman storage driver is not used for best performance](https://github.com/containers/podman/issues/13226#issuecomment-1555872420). - -To pull the `latest` the build environment Docker images, - -```sh -./src/docker/pull.sh -``` - -To build the `latest` build environment Docker images from the Docker configuration and local C++ core, - -```sh -pixi run build-docker-images --with-debug -``` - -The `--with-debug` flag will also build the `latest-debug` tagged images. - -To use these locally built images in the pixi build, remove (*clean*) the old build artifacts from the repository first. - -```sh -# Remove old build artifacts -pixi run clean - -pixi run build -``` - -## Command line interface (CLI) - -The `itk-wasm` [command line interface (CLI)](../introduction/parts.md#cli) is a [Node.js / NPM] script developed with the [PNPM] package manager tool. This CLI is included with the [`itk-wasm` package]. - -Development requires: - -1. [Node.js / NPM](https://nodejs.org/en/download/) -2. Bash, e.g. macOS or Linux terminal, [Windows Git Bash] or [WSL] terminal -3. [PNPM], which can be installed with `npm i -g pnpm` -4. Chrome and Firefox installed - -To build and test the CLI, - -```sh -git clone https://github.com/InsightSoftwareConsortium/ITK-Wasm -cd itk-wasm/packages/core/typescript/itk-wasm -pnpm install -pnpm build -pnpm test -``` - -## Language binding libraries - -The [language binding libaries](../introduction/parts.md#language-libraries): - -### JavaScript - -The development of `itk-wasm` is described above in the Command line interface section. - -### Python - -To develop the `itkwasm` Python package, which configured with [hatch](https://hatch.pypa.io/latest/): - -```sh -git clone https://github.com/InsightSoftwareConsortium/ITK-Wasm -cd itk-wasm/packages/core/python/itkwasm - -pip install hatch -hatch run download-pyodide -hatch run test -``` - -## Example packages - -[Example packages](../introduction/parts.md#example-packages) are maintained in the *itk-wasm/packages/* directory. These packages contain in the top level directory - -1. their C++ pipelines, -2. CMake configuration code, -3. a NPM *package.json* file to drive the build with pnpm. - -To develop these packages, at the top level, run: - -```sh -pixi run build -pixi run test -``` - -This will build and test the packages in order, according to their dependency topology, and the packages will use local workspace dependencies, including the `itk-wasm` CLI. - -The `build` and `test` targets are high-level targets that call other targets. They include targets for direct WebAssembly execution, TypeScript bindings, and Python bindings. These can be called individually either with [pnpm filters] or by changing into the package directory and calling the targets from there. - -### Debug builds - -In development, it often useful to [build the wasm in debug mode](../cxx/tutorial/debugging.md). To create a debug build, at the root level, clean the tree, call `build:emscripten:debug` and `build:wasi:debug`, then `build` and `test` as usual: - -```sh -pixi run clean -pixi shell -pnpm build:emscripten:debug -pnpm build:wasi:debug -pnpm build -pnpm test -``` - -### Testing data - -Testing data is stored in a package's *test/data* directory and shared across the direct wasm and language bindings tests. It is downloaded via the `test:data:download` target, which is called by the `test` target. - -To add new or modify testing data, add new files into the *test/data/input/* or *test/data/baseline/* directory, then run: - -```sh -pnpm test:data:pack -``` - -This will generate a new *test/data.tar.gz* tarball and output its CID. - -Upload the tarball to a publicly hosted HTTP location. A few example free services that can serve files include [FileBase], [web3.storage], and [data.kitware.com]. - -Then, update the CID and HTTP URL in *package.json*. - -## Documentation - -The [wasm.itk.org](https://wasm.itk.org/) documentation sources are found at the *docs/* directory. - -Documentation for individual packages's documentation can be found in the *typescript/README.md*, or *python/\/docs* directory. - -To preview wasm.itk.org documentation changes, three options are available. - -### Option 0: Edit on GitHub, use the pull request preview - -If files are edited with GitHub's web user interface, the pull request will -build a preview of changes with a pull request check called `docs/readthedocs.org:itkwasm`. -Click on the *Details* link to view the documentation build preview. - -### Option 1: Build and serve locally - -To compile the document locally create a python virtual environment and install the required packages. - -For example in Linux / macOS: - -```bash -cd itk-wasm/docs -python -m venv env -source env/bin/activate -pip install -r requirements.txt -``` - -Use `make html` in this directory to build the documentation. -Open `_build/html/index.html` in your browser to inspect the result. - -### Option 2: Autobuild and serve locally - -To automatically rebuild the website with any input markdown changes and serve -the result, use [sphinx-autobuild] - -```bash -cd itk-wasm/docs -pip install -r requirements.txt -pip install sphinx-autobuild -``` - -```bash -sphinx-autobuild -a . _build/html -``` - -This will start a server at [http://127.0.0.1:8000](http://127.0.0.1:8000) -and rebuild whenever the documentation changes. - -[C++ compiler toolchain]: https://docs.itk.org/en/latest/supported_compilers.html -[CMake]: https://cmake.org -[conventional commit]: https://www.conventionalcommits.org/en/v1.0.0/#summary -[current repository and branch]: https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/src/docker/itk-wasm-base/Dockerfile#L39-L41 -[data.kitware.com]: https://data.kitware.com/ -[FileBase]: https://filebase.com/ -[hatch]: https://hatch.pypa.io/latest/ -[`itk-wasm` package]: https://www.npmjs.com/package/itk-wasm -[`itkwasm` Python package]: https://pypi.org/project/itkwasm/ -[ITK]: https://docs.itk.org -[ITK Software Guide]: https://itk.org/ItkSoftwareGuide.pdf -[Node.js / NPM]: https://nodejs.org/en/download/ -[Podman]: https://podman.io/docs/installation -[Pixi]: https://pixi.sh/ -[pnpm workspace]: https://pnpm.io/workspaces -[PNPM]: https://pnpm.io/ -[pnpm filters]: https://pnpm.io/filtering -[sphinx-autobuild]: https://github.com/executablebooks/sphinx-autobuild -[standard GitHub contribution best practices]: https://docs.itk.org/en/latest/contributing/index.html -[web3.storage]: https://web3.storage/ -[Windows Git Bash]: https://gitforwindows.org/ -[WSL]: https://learn.microsoft.com/en-us/windows/wsl/install +# Hacking ITK-Wasm + +## TLDR + +Install: + +- [Podman] or [Docker Engine] +- [Pixi] +- [Google Chrome] +- [Firefox] + +```sh +pixi run build +pixi run test +``` + +and contribute the patch with standard GitHub best practices. + +## Introduction + +**Welcome to the ITK community! ☀️** + +We are glad you are here and appreciate your contribution. Please keep in mind our [community participation guidelines](https://github.com/InsightSoftwareConsortium/ITK/blob/master/CODE_OF_CONDUCT.md). + +We follow [standard GitHub contribution best practices]: pull requests made from forks are tested with continuous integration tests, and updates are made via code review before integration. + +We use the [conventional commit] standard for our commit message format in the *itk-wasm* repository. + +The C++ core and Docker build environment can be developed independently from the CLI, language-specific libraries, and example packages. The latter are developed as a [pnpm workspace]. Individual packages in the workspace can be developed independently after `pnpm install` is executed at the root. + +The following sections describe how to contribute to [**ITK-Wasm's constituent parts**](../introduction/parts.md). + +## C++ core + +ITK-Wasm's [C++ core](../introduction/parts.md#cxx-core) can be developed with native toolchains. The steps are: + +0. Install a [C++ compiler toolchain] and [CMake] +1. Build [ITK] +2. Build the `WebAssemblyInterface` module from this module against ITK +3. Run the tests + +We recommend using [pixi](https://pixi.sh) with a bash shell (including on Windows). +The steps to build and test the C++ core with a native toolchain are: + +1. Install pixi: `curl -fsSL https://pixi.sh/install.sh | bash` +2. Clone [the ITK-Wasm GitHub repository](https://github.com/InsightSoftwareConsortium/ITK-Wasm) +3. Run `pixi run test-itk-wasm` + +For additional guidance on C++ development, see the [ITK Software Guide]. + +If changes are needed in the ITK repository, start from the [current repository and branch] where we store changes that are being pushed upstream. + +### Testing data + +To prevent Git repository bloat, we add testing data through [CMake content links](https://docs.itk.org/en/latest/contributing/upload_binary_data.html) of [Content Identifiers (CIDs)](https://proto.school/anatomy-of-a-cid). To add new test data, + +1. Upload the data and download its content link *.cid* file with the [CMake w3 ExternalData Upload Tool](https://content-link-upload.itk.org/) +2. Move the *.cid* file to *itk-wasm/test/Input/* +3. Reference the content link with a `DATA{}` call in *itk-wasm/test/CMakeLists.txt*. + +## Build environment Docker images + +Builds of the [wasm build environment Docker images](../introduction/parts.md#docker) or WebAssembly modules require [Podman]. +*Note*: on Linux, ensure the [`vfs` podman storage driver is not used for best performance](https://github.com/containers/podman/issues/13226#issuecomment-1555872420). + +To pull the `latest` the build environment Docker images, + +```sh +./src/docker/pull.sh +``` + +To build the `latest` build environment Docker images from the Docker configuration and local C++ core, + +```sh +pixi run build-docker-images --with-debug +``` + +The `--with-debug` flag will also build the `latest-debug` tagged images. + +To use these locally built images in the pixi build, remove (*clean*) the old build artifacts from the repository first. + +```sh +# Remove old build artifacts +pixi run clean + +pixi run build +``` + +## Command line interface (CLI) + +The `itk-wasm` [command line interface (CLI)](../introduction/parts.md#cli) is a [Node.js / NPM] script developed with the [PNPM] package manager tool. This CLI is included with the [`itk-wasm` package]. + +Development requires: + +1. [Node.js / NPM](https://nodejs.org/en/download/) +2. Bash, e.g. macOS or Linux terminal, [Windows Git Bash] or [WSL] terminal +3. [PNPM], which can be installed with `npm i -g pnpm` +4. Chrome and Firefox installed + +To build and test the CLI, + +```sh +git clone https://github.com/InsightSoftwareConsortium/ITK-Wasm +cd itk-wasm/packages/core/typescript/itk-wasm +pnpm install +pnpm build +pnpm test +``` + +## Language binding libraries + +The [language binding libaries](../introduction/parts.md#language-libraries): + +### JavaScript + +The development of `itk-wasm` is described above in the Command line interface section. + +### Python + +To develop the `itkwasm` Python package, which configured with [hatch](https://hatch.pypa.io/latest/): + +```sh +git clone https://github.com/InsightSoftwareConsortium/ITK-Wasm +cd itk-wasm/packages/core/python/itkwasm + +pip install hatch +hatch run download-pyodide +hatch run test +``` + +## Example packages + +[Example packages](../introduction/parts.md#example-packages) are maintained in the *itk-wasm/packages/* directory. These packages contain in the top level directory + +1. their C++ pipelines, +2. CMake configuration code, +3. a NPM *package.json* file to drive the build with pnpm. + +To develop these packages, at the top level, run: + +```sh +pixi run build +pixi run test +``` + +This will build and test the packages in order, according to their dependency topology, and the packages will use local workspace dependencies, including the `itk-wasm` CLI. + +The `build` and `test` targets are high-level targets that call other targets. They include targets for direct WebAssembly execution, TypeScript bindings, and Python bindings. These can be called individually either with [pnpm filters] or by changing into the package directory and calling the targets from there. + +### Debug builds + +In development, it often useful to [build the wasm in debug mode](../cxx/tutorial/debugging.md). To create a debug build, at the root level, clean the tree, call `build:emscripten:debug` and `build:wasi:debug`, then `build` and `test` as usual: + +```sh +pixi run clean +pixi shell +pnpm build:emscripten:debug +pnpm build:wasi:debug +pnpm build +pnpm test +``` + +### Testing data + +Testing data is stored in a package's *test/data* directory and shared across the direct wasm and language bindings tests. It is downloaded via the `test:data:download` target, which is called by the `test` target. + +To add new or modify testing data, add new files into the *test/data/input/* or *test/data/baseline/* directory, then run: + +```sh +pnpm test:data:pack +``` + +This will generate a new *test/data.tar.gz* tarball and output its CID. + +Upload the tarball to a publicly hosted HTTP location. A few example free services that can serve files include [FileBase], [web3.storage], and [data.kitware.com]. + +Then, update the CID and HTTP URL in *package.json*. + +## Documentation + +The [wasm.itk.org](https://wasm.itk.org/) documentation sources are found at the *docs/* directory. + +Documentation for individual packages's documentation can be found in the *typescript/README.md*, or *python/\/docs* directory. + +To preview wasm.itk.org documentation changes, three options are available. + +### Option 0: Edit on GitHub, use the pull request preview + +If files are edited with GitHub's web user interface, the pull request will +build a preview of changes with a pull request check called `docs/readthedocs.org:itkwasm`. +Click on the *Details* link to view the documentation build preview. + +### Option 1: Build and serve locally + +To compile the document locally create a python virtual environment and install the required packages. + +For example in Linux / macOS: + +```bash +cd itk-wasm/docs +python -m venv env +source env/bin/activate +pip install -r requirements.txt +``` + +Use `make html` in this directory to build the documentation. +Open `_build/html/index.html` in your browser to inspect the result. + +### Option 2: Autobuild and serve locally + +To automatically rebuild the website with any input markdown changes and serve +the result, use [sphinx-autobuild] + +```bash +cd itk-wasm/docs +pip install -r requirements.txt +pip install sphinx-autobuild +``` + +```bash +sphinx-autobuild -a . _build/html +``` + +This will start a server at [http://127.0.0.1:8000](http://127.0.0.1:8000) +and rebuild whenever the documentation changes. + +[C++ compiler toolchain]: https://docs.itk.org/en/latest/supported_compilers.html +[CMake]: https://cmake.org +[conventional commit]: https://www.conventionalcommits.org/en/v1.0.0/#summary +[current repository and branch]: https://github.com/InsightSoftwareConsortium/ITK-Wasm/blob/main/src/docker/itk-wasm-base/Dockerfile#L39-L41 +[data.kitware.com]: https://data.kitware.com/ +[Docker Engine]: https://docs.docker.com/engine/install/ +[FileBase]: https://filebase.com/ +[Firefox]: https://www.mozilla.org/ +[Google Chrome]: https://www.google.com/chrome/ +[hatch]: https://hatch.pypa.io/latest/ +[`itk-wasm` package]: https://www.npmjs.com/package/itk-wasm +[`itkwasm` Python package]: https://pypi.org/project/itkwasm/ +[ITK]: https://docs.itk.org +[ITK Software Guide]: https://itk.org/ItkSoftwareGuide.pdf +[Node.js / NPM]: https://nodejs.org/en/download/ +[Podman]: https://podman.io/docs/installation +[Pixi]: https://pixi.sh/ +[pnpm workspace]: https://pnpm.io/workspaces +[PNPM]: https://pnpm.io/ +[pnpm filters]: https://pnpm.io/filtering +[sphinx-autobuild]: https://github.com/executablebooks/sphinx-autobuild +[standard GitHub contribution best practices]: https://docs.itk.org/en/latest/contributing/index.html +[web3.storage]: https://web3.storage/ +[Windows Git Bash]: https://gitforwindows.org/ +[WSL]: https://learn.microsoft.com/en-us/windows/wsl/install diff --git a/package.json b/package.json index 8d6b3e2ed..3fce558b4 100644 --- a/package.json +++ b/package.json @@ -41,7 +41,7 @@ "@shoelace-style/shoelace": "^2.12.0", "start-server-and-test": "^2.0.4", "ava": "^6.1.3", - 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