From 0dccfae61b75759d224dc72f18b01cca1c063c23 Mon Sep 17 00:00:00 2001
From: Claire Lemaitre <claire.lemaitre@inria.fr>
Date: Fri, 11 Jun 2021 10:36:15 +0200
Subject: [PATCH] prepare v2.2.3

---
 CHANGELOG.md   | 8 ++++++++
 CMakeLists.txt | 2 +-
 src/main.cpp   | 2 +-
 3 files changed, 10 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 264a3f1..fc83b28 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,6 +4,14 @@
 ## [Unreleased]
 
 --------------------------------------------------------------------------------
+## [2.2.3] - 2021-06-11
+
+* 2 novel options in the `Fill` (local assembly) module :
+  * `-fwd-only`:  output the first-contig extensions of failed gap-fillings in a separate file, it can be useful for the assembly of the extremities of linear genomes (as in the [MinYS](https://github.com/cguyomar/MinYS) tool)
+  * `-extend`:  do not try in reverse direction if no inserted sequence is assembled (bkpt mode), it can improve the running time and/or help the user controlling the direction of assembly (as in the [MTG-link](https://github.com/anne-gcd/MTG-Link) tool)
+
+--------------------------------------------------------------------------------
+
 ## [2.2.2] - 2020-06-19
 
 * A bug fix: updating gatb-core version, notably this fixes a bug in the `fill` module: nodes at extremities of contigs of size exactly `k` were not marked correctly, potentially leading to duplicated contigs in the contig graph. This could prevent exploring some parts of the graph, and if graph exploration parameters where set too large (`-max-nodes` and `-max-length`), it could lead in some rare cases to extreme running times and/or memory consumptions. This should no longer happen now.
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 1a1728b..3a89ffa 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -28,7 +28,7 @@ cmake_minimum_required(VERSION 3.1)
 # The default version number is the latest official build
 SET (gatb-tool_VERSION_MAJOR 2)
 SET (gatb-tool_VERSION_MINOR 2)
-SET (gatb-tool_VERSION_PATCH 2)
+SET (gatb-tool_VERSION_PATCH 3)
 
 # But, it is possible to define another release number during a local build
 IF (DEFINED MAJOR)
diff --git a/src/main.cpp b/src/main.cpp
index ba18589..e2640d2 100644
--- a/src/main.cpp
+++ b/src/main.cpp
@@ -26,7 +26,7 @@
 
 using namespace std;
 
-static const char* MTG_VERSION = "2.2.2";
+static const char* MTG_VERSION = "2.2.3";
 
 static const char* STR_FIND        = "find";
 static const char* STR_FILL = "fill";