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Build with Spack using Intel oneAPI and GCC compilers fails #204

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matt-graham opened this issue Aug 10, 2023 · 2 comments
Closed

Build with Spack using Intel oneAPI and GCC compilers fails #204

matt-graham opened this issue Aug 10, 2023 · 2 comments

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@matt-graham
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matt-graham commented Aug 10, 2023 •
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On trying to install NESO using Spack following the instructions here (other than pinning intel-oneapi-compilers package version to 2022.1.0 to avoid #183 and pinning [email protected] in the spec to avoid ExCALIBUR-NEPTUNE/NESO-Particles#37) the build step for neso with both Intel oneAPI and GCC (11.3) fails with a series of

error: 'class NESO::Particles::ErrorPropagate' has no member named 'reset'

errors due to the following lines

NESO/src/nektar_interface/particle_cell_mapping/map_particles_common.cpp

Line 34 in 41eb709

this->ep->reset();

NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp

Line 260 in 41eb709

this->ep->reset();

NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d_regular.cpp

Line 159 in 41eb709

this->ep->reset();

Full error output from Spack 
==> No binary for neso-working-h3xgtc4ae6uanaoggaudzzpu2rdog6ic found: installing from source
==> No patches needed for neso
==> neso: Executing phase: 'cmake'
==> neso: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    '/home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/gmake-4.4.1-lfd7azg2jflfkz3q5nz2blmoqtm5odua/bin/make' '-j8'

13 errors found in build log:
     37     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/nektar_interface/particle_cell_mapping/map_particles_host.cpp.o -MF CMakeFiles/nesolib.dir/src/nekt
            ar_interface/particle_cell_mapping/map_particles_host.cpp.o.d -o CMakeFiles/nesolib.dir/src/nektar_interface/particle_c
            ell_mapping/map_particles_host.cpp.o -c /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particl
            es_host.cpp
     38     [ 14%] Building CXX object CMakeFiles/nesolib.dir/src/run_info.cpp.o
     39     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/nektar_interface/particle_cell_mapping/nektar_graph_local_mapper.cpp.o -MF CMakeFiles/nesolib.dir/s
            rc/nektar_interface/particle_cell_mapping/nektar_graph_local_mapper.cpp.o.d -o CMakeFiles/nesolib.dir/src/nektar_interf
            ace/particle_cell_mapping/nektar_graph_local_mapper.cpp.o -c /home/matt/projects/NESO/src/nektar_interface/particle_cel
            l_mapping/nektar_graph_local_mapper.cpp
     40     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/nektar_interface/particle_cell_mapping/map_particles_common.cpp.o -MF CMakeFiles/nesolib.dir/src/ne
            ktar_interface/particle_cell_mapping/map_particles_common.cpp.o.d -o CMakeFiles/nesolib.dir/src/nektar_interface/partic
            le_cell_mapping/map_particles_common.cpp.o -c /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_p
            articles_common.cpp
     41     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/plasma.cpp.o -MF CMakeFiles/nesolib.dir/src/plasma.cpp.o.d -o CMakeFiles/nesolib.dir/src/plasma.cpp
            .o -c /home/matt/projects/NESO/src/plasma.cpp
     42     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/run_info.cpp.o -MF CMakeFiles/nesolib.dir/src/run_info.cpp.o.d -o CMakeFiles/nesolib.dir/src/run_in
            fo.cpp.o -c /home/matt/projects/NESO/src/run_info.cpp
  >> 43     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d_regular.cpp:159:13: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     44       this->ep->reset();
     45       ~~~~~~~~~~^
     46     [ 15%] Building CXX object CMakeFiles/nesolib.dir/src/simulation.cpp.o
     47     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/simulation.cpp.o -MF CMakeFiles/nesolib.dir/src/simulation.cpp.o.d -o CMakeFiles/nesolib.dir/src/si
            mulation.cpp.o -c /home/matt/projects/NESO/src/simulation.cpp
  >> 48     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_common.cpp:34:13: error: no member na
            med 'reset' in 'NESO::Particles::ErrorPropagate'
     49       this->ep->reset();
     50       ~~~~~~~~~~^
     51     [ 17%] Building CXX object CMakeFiles/nesolib.dir/src/species.cpp.o
     52     /home/matt/projects/spack/lib/spack/env/oneapi/icpx -DBOOST_HAS_NUMPY -DH5_BUILT_AS_DYNAMIC_LIB -DNEKTAR_MEMORY_POOL_EN
            ABLED -DNEKTAR_USE_MPI -pthread -DNEKTAR_USE_MPI -DNEKTAR_USE_SCOTCH -DNEKTAR_USE_THREAD_SAFETY -DNESO_DPCPP -DNESO_INT
            EL_MKL_FFT -DNESO_PARTICLES_DEVICE_TYPE_CPU -DNESO_PARTICLES_HDF5 -DTIXML_USE_STL -DWITH_PYTHON -D_FILE_OFFSET_BITS=64
            -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -D_POSIX_C_SOURCE=200809L -I/home/matt/projects/NESO/include -I
            /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/neso-particles-working-q3iaqpjkss25qconzv
            2fgml3ue6epnum/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/hdf5-1.12
            .2-fbuxbl7aupxbcnnfn3y3svyfjujpsvjt/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/onea
            pi-2022.1.0/nektar-5.3.0-2e0fb8-cjylsphiajva5zdlmhp6r23qd5guhabu/include/nektar++ -isystem /home/matt/projects/spack/op
            t/spack/linux-ubuntu22.04-skylake/intel-2021.6.0/boost-1.82.0-xawyekbk5na2prxdnzyghlia6n2bi4fj/include -isystem /home/m
            att/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/tinyxml-2.6.2-ipkz4jakpf42dp6qkcl4ejievipc2fms/i
            nclude -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/zlib-1.2.13-l7pm53kargisl
            ctzfnmmzwbge6hzephl/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/inte
            l-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/mpi/2021.9.0/include -isystem /home/matt/projects/spack/opt/spac
            k/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mpi-2021.9.0-yyk6e5w6s5ksqkfzipczihlylidoa3yz/include -isystem
             /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/scotch-6.1.3-n3lfaxew3zvpblnazwk2hjgxnw7
            bqgqs/include -isystem /home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/intel-oneapi-mkl-2
            023.1.0-u4gb7yhb6ooisdc2bmungaghvg4rddea/mkl/2023.1.0/include --dpcpp -fsycl  -O3 -DNDEBUG -std=gnu++17 -MD -MT CMakeFi
            les/nesolib.dir/src/species.cpp.o -MF CMakeFiles/nesolib.dir/src/species.cpp.o.d -o CMakeFiles/nesolib.dir/src/species.
            cpp.o -c /home/matt/projects/NESO/src/species.cpp
     53     1 error generated.
  >> 54     make[2]: *** [CMakeFiles/nesolib.dir/build.make:191: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_3d_regular.cpp.o] Error 1
     55     make[2]: *** Waiting for unfinished jobs....
     56     In file included from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_2d.cpp:1:
     57     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d.hpp:11:
     58     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d_regular.
            hpp:15:
     59     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4:
     60     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5:
     61     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4:
  >> 62     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     63         this->ep->reset();
     64         ~~~~~~~~~~^
     65     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_2d.cpp:76:47: note: in instantiation
            of member function 'NESO::Newton::MapParticlesNewton<NESO::Newton::MappingQuadLinear2D>::map' requested here
     66           this->map_particles_newton_linear_quad->map(particle_group, map_cell);
     67                                                   ^
     68     1 error generated.
  >> 69     make[2]: *** [CMakeFiles/nesolib.dir/build.make:149: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_2d.cpp.o] Error 1
     70     1 error generated.
  >> 71     make[2]: *** [CMakeFiles/nesolib.dir/build.make:205: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_common.cpp.o] Error 1
     72     In file included from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:1:
     73     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:23:
     74     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4:
     75     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5:
     76     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4:
  >> 77     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     78         this->ep->reset();
     79         ~~~~~~~~~~^
     80     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:60:12: note: in instantiat
            ion of member function 'NESO::Newton::MapParticlesNewton<NESO::Newton::MappingTetLinear3D>::map' requested here
     81           ptr->map(particle_group, map_cell);
     82                ^
     83     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:78:3: note: in instantiation o
            f function template specialization 'NESO::MapParticles3D::map_newton_internal<NESO::Newton::MapParticlesNewton<NESO::Ne
            wton::MappingTetLinear3D>>' requested here

     ...

     85       ^
     86     In file included from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:1:
     87     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:23:
     88     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4:
     89     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5:
     90     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4:
  >> 91     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     92         this->ep->reset();
     93         ~~~~~~~~~~^
     94     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:60:12: note: in instantiat
            ion of member function 'NESO::Newton::MapParticlesNewton<NESO::Newton::MappingPrismLinear3D>::map' requested here
     95           ptr->map(particle_group, map_cell);
     96                ^
     97     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:80:3: note: in instantiation o
            f function template specialization 'NESO::MapParticles3D::map_newton_internal<NESO::Newton::MapParticlesNewton<NESO::Ne
            wton::MappingPrismLinear3D>>' requested here

     ...

     99       ^
     100    In file included from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:1:
     101    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:23:
     102    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4:
     103    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5:
     104    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4:
  >> 105    /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     106        this->ep->reset();
     107        ~~~~~~~~~~^
     108    /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:60:12: note: in instantiat
            ion of member function 'NESO::Newton::MapParticlesNewton<NESO::Newton::MappingHexLinear3D>::map' requested here
     109          ptr->map(particle_group, map_cell);
     110               ^
     111    /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:82:3: note: in instantiation o
            f function template specialization 'NESO::MapParticles3D::map_newton_internal<NESO::Newton::MapParticlesNewton<NESO::Ne
            wton::MappingHexLinear3D>>' requested here

     ...

     113      ^
     114    In file included from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:1:
     115    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:23:
     116    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4:
     117    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5:
     118    In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4:
  >> 119    /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: no memb
            er named 'reset' in 'NESO::Particles::ErrorPropagate'
     120        this->ep->reset();
     121        ~~~~~~~~~~^
     122    /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:60:12: note: in instantiat
            ion of member function 'NESO::Newton::MapParticlesNewton<NESO::Newton::MappingPyrLinear3D>::map' requested here
     123          ptr->map(particle_group, map_cell);
     124               ^
     125    /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:84:3: note: in instantiation o
            f function template specialization 'NESO::MapParticles3D::map_newton_internal<NESO::Newton::MapParticlesNewton<NESO::Ne
            wton::MappingPyrLinear3D>>' requested here
     126      map_newton_internal(std::get<3>(this->map_particles_3d_deformed_linear),
     127      ^
     128    4 errors generated.
  >> 129    make[2]: *** [CMakeFiles/nesolib.dir/build.make:177: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_3d.cpp.o] Error 1
     130    make[2]: Leaving directory '/home/matt/projects/NESO/spack-build-h3xgtc4'
  >> 131    make[1]: *** [CMakeFiles/Makefile2:162: CMakeFiles/nesolib.dir/all] Error 2
     132    make[1]: Leaving directory '/home/matt/projects/NESO/spack-build-h3xgtc4'
  >> 133    make: *** [Makefile:149: all] Error 2

See build log for details:
  /home/matt/projects/NESO/spack-build-out.txt

==> Installing neso-working-zdhcdn4nqkmxsyocdmhpxioenkdgktv2
==> No binary for neso-working-zdhcdn4nqkmxsyocdmhpxioenkdgktv2 found: installing from source
==> No patches needed for neso
==> neso: Executing phase: 'cmake'
==> neso: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
    '/home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.3.0/gmake-4.4.1-jdhnqpr7cbfxhvbdw6nsgis6u6k2tc2i/bin/make' '-j8'

14 errors found in build log:
     48                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d_regular.
            hpp:15,
     49                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d.hpp:11,
     50                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_2d.
            hpp:5,
     51                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/nektar_graph_local_mapper
            .hpp:13,
     52                      from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/nektar_graph_local_mapper.cpp
            :1:
     53     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp: In member function 'v
            oid NESO::Newton::MapParticlesNewton<NEWTON_TYPE>::map(NESO::Particles::ParticleGroup&, int)':
  >> 54     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: 'class
            NESO::Particles::ErrorPropagate' has no member named 'reset'
     55       260 |     this->ep->reset();
     56           |               ^~~~~
     57     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d_regular.cpp: In member function 'v
            oid NESO::MapParticles3DRegular::map(NESO::Particles::ParticleGroup&, int)':
  >> 58     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d_regular.cpp:159:13: error: 'class
            NESO::Particles::ErrorPropagate' has no member named 'reset'
     59       159 |   this->ep->reset();
     60           |             ^~~~~
     61     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4,
     62                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5,
     63                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4,
     64                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d_regular.
            hpp:15,
     65                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d.hpp:11,
     66                      from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_2d.cpp:1:
     67     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp: In member function 'v
            oid NESO::Newton::MapParticlesNewton<NEWTON_TYPE>::map(NESO::Particles::ParticleGroup&, int)':
  >> 68     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: 'class
            NESO::Particles::ErrorPropagate' has no member named 'reset'
     69       260 |     this->ep->reset();
     70           |               ^~~~~
     71     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4,
     72                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5,
     73                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4,
     74                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_2d_regular.
            hpp:15,
     75                      from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_2d_regular.cpp:
            1:
     76     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp: In member function 'v
            oid NESO::Newton::MapParticlesNewton<NEWTON_TYPE>::map(NESO::Particles::ParticleGroup&, int)':
  >> 77     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: 'class
            NESO::Particles::ErrorPropagate' has no member named 'reset'
     78       260 |     this->ep->reset();
     79           |               ^~~~~
     80     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_common.cpp: In member function 'bool
            NESO::MapParticlesCommon::check_map(NESO::Particles::ParticleGroup&, int, bool)':
  >> 81     /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_common.cpp:34:13: error: 'class NESO:
            :Particles::ErrorPropagate' has no member named 'reset'
     82        34 |   this->ep->reset();
     83           |             ^~~~~
     84     In file included from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/particle_cell_mapping_new
            ton.hpp:4,
     85                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_hex.hpp:5,
     86                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/newton_geom_interfaces.hp
            p:4,
     87                      from /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_3d.hpp:23,
     88                      from /home/matt/projects/NESO/src/nektar_interface/particle_cell_mapping/map_particles_3d.cpp:1:
     89     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp: In member function 'v
            oid NESO::Newton::MapParticlesNewton<NEWTON_TYPE>::map(NESO::Particles::ParticleGroup&, int)':
  >> 90     /home/matt/projects/NESO/include/nektar_interface/particle_cell_mapping/map_particles_newton.hpp:260:15: error: 'class
            NESO::Particles::ErrorPropagate' has no member named 'reset'
     91       260 |     this->ep->reset();
     92           |               ^~~~~
  >> 93     make[2]: *** [CMakeFiles/nesolib.dir/build.make:257: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            nektar_graph_local_mapper.cpp.o] Error 1
     94     make[2]: *** Waiting for unfinished jobs....
  >> 95     make[2]: *** [CMakeFiles/nesolib.dir/build.make:225: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_common.cpp.o] Error 1
  >> 96     make[2]: *** [CMakeFiles/nesolib.dir/build.make:209: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_3d_regular.cpp.o] Error 1
  >> 97     make[2]: *** [CMakeFiles/nesolib.dir/build.make:161: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_2d.cpp.o] Error 1
  >> 98     make[2]: *** [CMakeFiles/nesolib.dir/build.make:177: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_2d_regular.cpp.o] Error 1
  >> 99     make[2]: *** [CMakeFiles/nesolib.dir/build.make:193: CMakeFiles/nesolib.dir/src/nektar_interface/particle_cell_mapping/
            map_particles_3d.cpp.o] Error 1
     100    make[2]: Leaving directory '/home/matt/projects/NESO/spack-build-zdhcdn4'
  >> 101    make[1]: *** [CMakeFiles/Makefile2:162: CMakeFiles/nesolib.dir/all] Error 2
     102    make[1]: Leaving directory '/home/matt/projects/NESO/spack-build-zdhcdn4'
  >> 103    make: *** [Makefile:149: all] Error 2

See build log for details:
  /home/matt/projects/NESO/spack-build-out.txt

==> Error: neso-working-h3xgtc4ae6uanaoggaudzzpu2rdog6ic: ProcessError: Command exited with status 2:
    '/home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/oneapi-2022.1.0/gmake-4.4.1-lfd7azg2jflfkz3q5nz2blmoqtm5odua/bin/make' '-j8'
==> Error: neso-working-zdhcdn4nqkmxsyocdmhpxioenkdgktv2: ProcessError: Command exited with status 2:
    '/home/matt/projects/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.3.0/gmake-4.4.1-jdhnqpr7cbfxhvbdw6nsgis6u6k2tc2i/bin/make' '-j8'
==> Error: neso-working-zdhcdn4nqkmxsyocdmhpxioenkdgktv2: Package was not installed
==> Error: neso-working-h3xgtc4ae6uanaoggaudzzpu2rdog6ic: Package was not installed
==> Error: Installation request failed.  Refer to reported errors for failing package(s).
@will-saunders-ukaea
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Hello, thanks for raising this issue, I missed updating a sub-module. The sub-module for NESO-Particles was out of date. This should be fixed on main now. (You may have to run something like git submodule update).

@matt-graham
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Thanks @will-saunders-ukaea - can confirm after pulling latest main and updating submodules that I no longer get these build errors.

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@matt-graham @will-saunders-ukaea