.drone.yml

workspace:
  path: src/

pipeline:
  build_figures:
    image: brettbj/ehr-imputation:latest
    commands:
      - ls /drone/src
      - Rscript ./plots/Figure_2.R
      - Rscript ./plots/Figure_3.R
      - Rscript ./plots/Figure_4.R
      - Rscript ./plots/Figure_4_supplements.R
      - Rscript ./plots/Figure_5.R
      - Rscript ./plots/Figure_6.R
    volumes:
      - /data/imputation:/data

  push_to_github:
    image: brettbj/ehr-imputation:latest
    secrets: [ git_publish_key ]
    commands:
      - git config user.email "brettbj@gmail.com"
      - git config user.name "Brett Beaulieu-Jones"
      - git config --global push.default simple
      - git remote set-url origin https://brettbj:$GIT_PUBLISH_KEY@github.com/epistasislab/imputation

      - git add ./figures/*
      - git commit -a -m "Commit from drone"

      - git fetch
      - git branch --set-upstream-to=origin/master master
      - git pull -s recursive -X ours
      - git push

branches: develop